Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi438g00058 ATGGAAAGCAAGACTGAAACTCACATGACATCGGCTGTGGCCTTTGTTGAAGGGGGCATTCAAGAATCCTGTGATGATGCTTGCAGTATATGCCTTGAGGAGTTTTGTGAAAGTGATCCTTCAACGGTCACAACTTGTAGGCATGAGTTTCACCTGCAGTGCATTCTTGAATGGGGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAATCTATTAGCTTGAAGGATCCTACCAGTCAGGAATTGTTTGAGGCGGTAGAGCAGGAGAGGAAGCTGAGGGTTACTCCATCAAGGAATGCTGCTATTTTTCGTCACCCTGCCCTTGGTGATTTTGATTTGCAGCAACTACGCATGAGTGTCAATGATGCTGATCTTGAAGAGCGAATAATCCAACATTTAGCTGCTGCTGCAGCAATGGGGAGAGCCAACCACCTTGTTCGGAGGGAAGTGCAGCGAACTCGGTCATCTGCTCATGGTCATCCACATTTCTTAGTATTCTCAACTCAGCCTTTTGCACCTTCATTAAGTCCTGATTCAGCTGCTGAAAAGGGGAAATGA 558 0.4677 MESKTETHMTSAVAFVEGGIQESCDDACSICLEEFCESDPSTVTTCRHEFHLQCILEWGQRSSQCPMCWQSISLKDPTSQELFEAVEQERKLRVTPSRNAAIFRHPALGDFDLQQLRMSVNDADLEERIIQHLAAAAAMGRANHLVRREVQRTRSSAHGHPHFLVFSTQPFAPSLSPDSAAEKGK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi438g00058 185 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Sebi438g00058 185 FunFam E3 ubiquitin-protein ligase RHF2A 1 102 - -
Sebi438g00058 185 Pfam Ring finger domain 27 68 IPR001841 -
Sebi438g00058 185 SUPERFAMILY RING/U-box 20 76 - -
Sebi438g00058 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 78 IPR013083 -
Sebi438g00058 185 SMART ring_2 28 68 IPR001841 -
Sebi438g00058 185 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi438g00058 Sebi-Chr438 744695 746747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi438g00058 25 70 C3H Transcription Factor Family AT5G15790 50.000 5.30e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi438g00058 K19043 - gmx:100800419 301.212