Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi438g00055 ATGGAGCGGGTTGGCTCTCCATCTCGCATGAAAAAAGCTCAAATGACACATGAGTGGTGGAGTATGGAGAATGCGAACACGTGTGGATTAGGGAGAACGAAATCGGATCAGCTAGTTGAATCGGTGGTAGCAGCGATGAAGTCGCCGGCAGCATCAAGTAGTGAATCAATAGGTGGTGGAAACTTGTCGAGGAAGTCAAGCCGGATGATGATGACGGCGTCACCAGGTGGCGGGAAAAACACACACATAAGGAAGGCAAGGAGCGCACAGTTGAAGGTGGAATTGGATGAGGTTAGCAGTGGAGCGGCTCTTAGTAGAGCTTCCAGTGCAAGTTTGGGACTCTCATTCTCCTTCACCGGCTTCACTATGCCTCCGGACGAAATCGCTGACACCAAACCTTTCAGCGATGATGATATCCCTGAGGATATAGAAGCCGGAAGTCATAAGCCAAAGTTTCAAACGGAACCTACTCTGCCAATATATCTGAAGTTCACGGATGTGACATACAAGGTAGTGATTAAAGGCATGACGACAACTGAGGAGAAAGATATCTTGAAGGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCATTGATGGGTCCCTCAGGGAGTGGAAAGACATCTTTGTTAAATCTGCTTGGAGCCAGGGTAAATCATACCACAATAGGTGGCTCTATCACTTATAATGACCAACCATATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTCCTCATCTAACTGTGAAAGAAACATTGACATATGCAGCCCGCCTAAAGTTGCCAAATACATTAACGAAAGAGCAAAAGGAAAAACGAGCTTTAGATGTCATCGTTGAGCTGGGCTTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTTCGTTAGAGGAGTATCCGGTGGAGAGAGGAAGAGAGTTTGTATCGGCAATGAGATCATAATCAACCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTGAGGATAGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACTGTAGTGACAACAATCCATCAACCATCAAGCAGACTCTTCCATAAATTCGATAAATTGATCCTTCTAGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCGGAAGCAATGGACTACTTCCAATGCATAGGGTGTACGCCTCTTATTGCCATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTAAACGATATTTCTGTACCATCAGAGTTAGATGATAGAGTGCACATGGGAAATGCAGAAGCTGAAACACGGAATGGGAAACCATCAGCAGCAGTTGTACAAGAGTATCTGGTGGAGGCATATGAGACTCGAGTTGCAGAAACAGAGAAGAAAAAGCTAATGATTCCTATCCCCCTTGATGAAGAACTGAAGTCTAAGATTTGTTCTCGTAAAAGACAGTGGGGTGCAAGTTGGTTTGAGCAATATTTCATATTATTTTCAAGAGGATTCAAAGAACGGAGGCATGACTATTTCAGCTGGTTGAGAATCACCCAAGTTATATCCACTGCAGTCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAATAACCCAAAAGGTCTGCAAGACCAGGCAGGACTGCTTTTCTTTATTGCCGTCTTTTGGGGATTCTTTCCTGTCTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGGCTAAGGAACGAGCAACAGATATGTACAGATTAAGTGCATACTTCGTGGCTAGAACTACAAGTGACATTCCACTAGACCTAGTATTACCAGTGCTTTTCCTCCTCGTTGTTTATTTCATGGCTGGCTTGAGACTGAGTGCAGGGCCTTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATTGTGGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTAATGGACTTGAAAAAGGCAACAACTTTGGCTTCAGTGACTGTGATGACATTCATGCTGGCTGGAGGTTTCTTTGTGAAGAAAGTCCCCATATTCATATCTTGGATTCGGTACCTATCTTTCAACTACCACACGTATAAACTTTTGCTGAAGGTGCAATATGAACACATTACACCTAGCATAAATGGGATCAGAATTGACAATGGTTCCACAGAGGTTGCTGCTCTGATAGTCATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCTCTGCGGTGGATGAAACTTCAAGCTTGA 2271 0.4386 MERVGSPSRMKKAQMTHEWWSMENANTCGLGRTKSDQLVESVVAAMKSPAASSSESIGGGNLSRKSSRMMMTASPGGGKNTHIRKARSAQLKVELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADTKPFSDDDIPEDIEAGSHKPKFQTEPTLPIYLKFTDVTYKVVIKGMTTTEEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGARVNHTTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLKLPNTLTKEQKEKRALDVIVELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQCIGCTPLIAMNPAEFLLDLANGNVNDISVPSELDDRVHMGNAEAETRNGKPSAAVVQEYLVEAYETRVAETEKKKLMIPIPLDEELKSKICSRKRQWGASWFEQYFILFSRGFKERRHDYFSWLRITQVISTAVILGLLWWQSDANNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLAKERATDMYRLSAYFVARTTSDIPLDLVLPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKKATTLASVTVMTFMLAGGFFVKKVPIFISWIRYLSFNYHTYKLLLKVQYEHITPSINGIRIDNGSTEVAALIVMVFGYRLLAYLSLRWMKLQA 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi438g00055 756 CDD ABCG_EPDR 159 390 - -
Sebi438g00055 756 Pfam ABC-2 type transporter 503 712 IPR013525 GO:0016020|GO:0140359
Sebi438g00055 756 Pfam ABC transporter 185 336 IPR003439 GO:0005524
Sebi438g00055 756 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 135 746 - -
Sebi438g00055 756 Gene3D - 161 402 IPR027417 -
Sebi438g00055 756 SMART AAA_5 194 385 IPR003593 GO:0016887
Sebi438g00055 756 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 162 408 IPR003439 GO:0005524
Sebi438g00055 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 401 IPR027417 -
Sebi438g00055 756 MobiDBLite consensus disorder prediction 48 67 - -
Sebi438g00055 756 FunFam ABC transporter G family member 22 172 402 - -
Sebi438g00055 756 ProSitePatterns ABC transporters family signature. 308 322 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi438g00055 Sebi-Chr438 689556 699091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi438g00055 184 422 Calmodulin-binding Proteins AT2G36910 28.514 1.03e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi438g00055 K05681 - gmx:100796008 1229.93