Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi438g00036 ATGGGTGCCAATTCATTGCTATCCGAGTCGACTCACGATCTCGACGAGCAGATCTCCCAGCTCATGCAGTGCAAACCACTCTCTGAGCAACAGGTTAGAGAATTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGCGATTATGTGGATCGGGGTTATTATTCAGTTGAGACTGTAACACTCCTTGTGGCACTAAAAGTGAGGTATCCTCAGCGAATTACTATTCTTAGAGGAAATCATGAAAGTCGTCAGATTACTCAAGTATATGGATTTTACGATGAATGCCTAAGAAAGTATGGTAGTGCTAATGTTTGGAAGATCTTTACAGACCTTTTTGATTTTTTTCCATTGACTGCATTGGTTGAATCAGAAATATTCTGTTTGCATGGTGGACTGTCGCCTTCAATTGAGACCCTTGACAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTATTGTGGTCTGACCCAGATGATAGATGTGGCTGGGGGATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACAAACAGCCTAAAATTGATTGCTAGAGCTCATCAGCTGGTCATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCTCCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTAGAAGTTGATGATTGCAAGGGCCACACATTTATCCAGTTTGAACCCGCTCCGAGGAGAGGAGAGCCTGATGTCACCCGTAGTTGTGCATCCTCAATGGCAGGTAACATTCCACTGATCTGTTACACTCAAGAACTTGCTGGACAGCCTGTCTGGGAGAAGCCGCCAAGATAA 1011 0.4332 MGANSLLSESTHDLDEQISQLMQCKPLSEQQVRELCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRSCASSMAGNIPLICYTQELAGQPVWEKPPR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi438g00036 336 SMART pp2a_7 27 297 IPR006186 GO:0016787
Sebi438g00036 336 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Sebi438g00036 336 FunFam Serine/threonine-protein phosphatase 7 312 - -
Sebi438g00036 336 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Sebi438g00036 336 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Sebi438g00036 336 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Sebi438g00036 336 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Sebi438g00036 336 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Sebi438g00036 336 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Sebi438g00036 336 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Sebi438g00036 336 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Sebi438g00036 336 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 304 IPR047129 GO:0004722
Sebi438g00036 336 Gene3D - 7 312 IPR029052 -
Sebi438g00036 336 CDD MPP_PP2A_PP4_PP6 13 297 - -
Sebi438g00036 336 SUPERFAMILY Metallo-dependent phosphatases 10 298 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi438g00036 Sebi-Chr438 446014 452057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi438g00036 35 243 Calmodulin-binding Proteins AT5G63870 34.661 2.87e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi438g00036 K04382 - gmx:100775812 631.713