Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi438g00025 ATGGCGGAAGGGAAGGAAGAGAGCAAATCTAGCGAAGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACGGAAGCGGAACTGCTTGCAATGTTCAGGGAGTTCGCTTTGGTCGACGAAGTCAACATCATCAAGGACAAAACCACACGCGCTTCTCGAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGAAGAGGCTGATAAGGCCGTCAATGCGTGCCATAATAAGAAAACGCTACCAGGGGCATCTAGCCCATTGCAAGTGAAGTATGCAGATGGCGAATTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCGAAGAATGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTAGAGGCAATAAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAGGCTCGAAGAGCTCAAAAAGCACAGTCCCAAGCTTCTAATGTACCACATGCTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGGGTTATGTTCCTCCATATAATGGTTATGGTTATCAGGCTCCTGGAAGTTATGGGATCATGCCATACCGCATGCCACCAATGCAGAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCAAGGAAATGCATTGCGGCCTGATCTTGGTCCCAATATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTACGTTAGCTCTTATCCTGCTGTGCCAGGCCTACAACATCCAATGGCTTATCCTGCAGGAATGATTAGTCCAAGGCCTATGAGCAGTCCTCCTGGTTCTGTCTCACCTGCTGGTGGAAATAACAACTCCGCTACATCTTCAGGGGCCAGCAAAAATTCCGGGGGTCAGGTTGAAGGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCAACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGTAAAGCCTATACTCCATTTATTAATGAATTTGATGGGTTTTGTGTGGAGCATGTGTTTGATGAGGTCCCATTTGCAGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCTGCCATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACAGGGCAAACCTTACTGA 1374 0.4381 MAEGKEESKSSEESVKLFVGQVPKHMTEAELLAMFREFALVDEVNIIKDKTTRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHADSQHPSLFGALPMGYVPPYNGYGYQAPGSYGIMPYRMPPMQNQPGFHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVSSYPAVPGLQHPMAYPAGMISPRPMSSPPGSVSPAGGNNNSATSSGASKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGKAYTPFINEFDGFCVEHVFDEVPFAGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKQGKPY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi438g00025 457 CDD RRM1_2_CELF1-6_like 104 179 - -
Sebi438g00025 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Sebi438g00025 457 Gene3D - 322 455 IPR012677 -
Sebi438g00025 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 450 IPR000504 GO:0003723
Sebi438g00025 457 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Sebi438g00025 457 MobiDBLite consensus disorder prediction 185 208 - -
Sebi438g00025 457 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Sebi438g00025 457 MobiDBLite consensus disorder prediction 193 207 - -
Sebi438g00025 457 MobiDBLite consensus disorder prediction 304 340 - -
Sebi438g00025 457 SMART rrm1_1 104 179 IPR000504 GO:0003723
Sebi438g00025 457 SMART rrm1_1 16 92 IPR000504 GO:0003723
Sebi438g00025 457 SMART rrm1_1 347 446 IPR000504 GO:0003723
Sebi438g00025 457 MobiDBLite consensus disorder prediction 316 337 - -
Sebi438g00025 457 CDD RRM1_2_CELF1-6_like 16 92 - -
Sebi438g00025 457 CDD RRM3_CELF1-6 348 446 - -
Sebi438g00025 457 Gene3D - 101 192 IPR012677 -
Sebi438g00025 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Sebi438g00025 457 SUPERFAMILY RNA-binding domain, RBD 103 390 IPR035979 GO:0003676
Sebi438g00025 457 Gene3D - 2 100 IPR012677 -
Sebi438g00025 457 FunFam RNA-binding protein BRN1 2 99 - -
Sebi438g00025 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Sebi438g00025 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Sebi438g00025 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 390 IPR000504 GO:0003723
Sebi438g00025 457 PANTHER RNA BINDING PROTEIN 14 450 - -
Sebi438g00025 457 SUPERFAMILY RNA-binding domain, RBD 416 454 IPR035979 GO:0003676
Sebi438g00025 457 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Sebi438g00025 457 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Sebi438g00025 457 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Sebi438g00025 457 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi438g00025 Sebi-Chr438 293016 298500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi438g00025 5 324 Eukaryotic Initiation Factors Gene Family AT2G23350 28.161 2.15e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi438g00025 K13207 - gmx:100813239 760.37