Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi438g00021 ATGGAAGGCGTAGCAAGAGAGAGGCTTAGCCCTGCTCCTCACTCATCCTCCGGTGACCGAGGTGGGGACGATGATTTGTATTGTGAACTGTGGCATGCATGCGCGGGGAGAGTGTATGTTCCTGAGGTTGGAGAGAAGGTATTCTACTTGCCACAGGGTCACTTGGAGCAGGTTGCTGCTTTTACTCAACATCAGCGAGATGGTCACATGGAAATTCCAGTATATGATTTGCCTTTTAAGATCTTATGCAGGGTTATGTCTGTTCAGTTAAAGGCTGAAGCTTACACAGATGAAGTTTTTGCTCAAGTTACATTGCTTCCGGAGTCCAAGCAAGATGATCTTAGTTCAGAAGACACTAGTGAGATACCTCGCAGAACTAAACCCTACTCTTTTAGCAAGATACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGCGACATGCAGATGAATGCTTCCGCCCTCTGGACATGACTCTTCAAACACCAATGCAAGAGCTGGTTGCGAAGGACTTGCATGGGTTCGAGTGGCATTTTCGGCATATATATCGCGGTCAGCCGAAAAGACACTTGCTTACTAGCGGTTGGAGCACATTTGTTAATTCAAAAAAACTTGTCGCTGGAGACGCATGCATTTTCGTTAGTGGAGACAATGGAGAAATTCGTGTTGGGATTCGTCGAGCAACGAAACAACACAACAATGGAGCCACATCTTCATCTCTGATATCAGGCCATAGCATGCAACTTGGAATTTTGACCAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTCAGTGTCTATTACCGCCCTTGGACGAATCCCTTTGAGTTTATTATTCCTGTGAAAAACTACATGAAGTCAACTGAAGTGGACTATTCAATTGGAACGAGAGTACAAACGCTGCTACAAGTTGAAGAATCTACAAGAAGATATGCAGGTACGATAATTGGTATTGAAGATATCGATAAGATTAGGTGGCCTGGTTCAAAATGGAAATGTCTCAAGGTGCAATGGGATGCCATACTAAATACGTATGTTAATCCTGAGAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAACCTGTCAAGAATAAGCGCGTTCCTGTTCTCCCCCAACCAAACAAGGCACGTGCACTTAACCCGCCATTGCCTGGATTAAATGGCTTTGCCAATGATGGCACAGTTCAGAATTCAGCCAGACCTGCATCTCAGAGAGTGGATAGGGAATTGCAAGGTGAAGATTACAATGGCTTATGTTCTCCACAACCTTTGCAAAAGCCACCATCAACAGATGTCCTCCTACCAATGAAGGTCCCCACCATTGTGATGAAGAATCCAAATCAGCTTCCCTCTTTTAAGCAAGACCATCTTCACCAATCTCTTGGAAGCTCAGTGTCATTTTCACATGAAGACATCTCAACTTCAAATTCAAATGTGAAATCCACTCTTTCTGAATCCCAGGGATGGCCTCCCTCTGAATCTAAAGATGAAAATGATTTTACTTTTGGCCAACCTGGCAGCAGCAGCAGATTCAAGCTTTTTGGGGTTAGTTTAATTGATGGGCAACCGGAGCTCCCTTCACCACAATTTTCTACTTTTAGCAAAATTTCTAGTCCTCCAATATGTGTTACCGCTGGGAAAACATGCAAGAAGTGTCGCTCTGTTAATAGGAGTTGCACAAAGGTGCTTAAGATGGGAACTGCTCTTGGAAGAGCGATTGACCTCACCCGTTTAGGTGGATATGATGAGCTCATTTCTGAACTCGACCGGATGTTTGATTTTGGAGGAAGCTTAATCAATGGAAGCAGCGGATGGCATGTGACCTGCATAGATGATGATGGAGATATGATGCTGTTAGCGGATTACCCTTGGCAGGATTTCCAATCCGTGGTACAAAAGATGATCATATGTCCAAAGGATGGTACTAACAATCCCAATCCAAGCTCCTCAGCAGATCCTTCAAGGCTTTAG 1986 0.4466 MEGVARERLSPAPHSSSGDRGGDDDLYCELWHACAGRVYVPEVGEKVFYLPQGHLEQVAAFTQHQRDGHMEIPVYDLPFKILCRVMSVQLKAEAYTDEVFAQVTLLPESKQDDLSSEDTSEIPRRTKPYSFSKILTPSDTSTHGGFSIPKRHADECFRPLDMTLQTPMQELVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNSKKLVAGDACIFVSGDNGEIRVGIRRATKQHNNGATSSSLISGHSMQLGILTSASHAVATGSMFSVYYRPWTNPFEFIIPVKNYMKSTEVDYSIGTRVQTLLQVEESTRRYAGTIIGIEDIDKIRWPGSKWKCLKVQWDAILNTYVNPERVCPWWIEPLEPVKNKRVPVLPQPNKARALNPPLPGLNGFANDGTVQNSARPASQRVDRELQGEDYNGLCSPQPLQKPPSTDVLLPMKVPTIVMKNPNQLPSFKQDHLHQSLGSSVSFSHEDISTSNSNVKSTLSESQGWPPSESKDENDFTFGQPGSSSRFKLFGVSLIDGQPELPSPQFSTFSKISSPPICVTAGKTCKKCRSVNRSCTKVLKMGTALGRAIDLTRLGGYDELISELDRMFDFGGSLINGSSGWHVTCIDDDGDMMLLADYPWQDFQSVVQKMIICPKDGTNNPNPSSSADPSRL 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi438g00021 661 FunFam Auxin response factor 129 233 - -
Sebi438g00021 661 MobiDBLite consensus disorder prediction 468 507 - -
Sebi438g00021 661 Pfam Auxin response factor 259 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi438g00021 661 ProSiteProfiles PB1 domain profile. 562 645 IPR000270 GO:0005515
Sebi438g00021 661 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Sebi438g00021 661 SUPERFAMILY CAD & PB1 domains 566 638 - -
Sebi438g00021 661 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Sebi438g00021 661 SUPERFAMILY DNA-binding pseudobarrel domain 126 261 IPR015300 -
Sebi438g00021 661 FunFam Auxin response factor 296 368 - -
Sebi438g00021 661 MobiDBLite consensus disorder prediction 1 21 - -
Sebi438g00021 661 Gene3D - 296 369 - -
Sebi438g00021 661 CDD B3_DNA 130 231 IPR003340 GO:0003677
Sebi438g00021 661 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 644 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi438g00021 661 SMART B3_2 131 233 IPR003340 GO:0003677
Sebi438g00021 661 Gene3D - 558 649 - -
Sebi438g00021 661 Gene3D - 129 233 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi438g00021 Sebi-Chr438 246748 255693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi438g00021 561 654 B3 DNA Binding Superfamily AT5G62000 44.681 6.16e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi438g00021 AUX_IAA 2.8e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi438g00021 - - lja:Lj1g3v4764520.2 979.933