Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi438g00003 ATGGAATTGTACGGTCGGAACCCGGCAAGGAATGGGTCAAACCCGGGGAATCAACCCGAATGGCGCTCACCAGCCGGCGATACTAGTCTCGAAGGTGTTTCTCCCTCAAACTCTGTGCTTCTTTCCATAGCCTTTTCAGTTTTCACTCGTTGTGACGCTGTTAGGGTTTTAGTAATGTGGAAGTTAGGTTTGGGGGTTTGGCCTAATTTGTGTTCTGGTGCAGAATCCATGTGGCACTTGACGCTCAGTAGCAGCGAATCGTACCCGGAGCGACCCGGTGTTCCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTAGCAGGTGTCGGTACAATCATCCTCGTGATCGAGCTGCGGTAATCCTTCTAAAATTGTCTGCATTAGGAGCGGTGGTGAGTGGTCCTTCAAACGATGAGAATCCAGTTGCGTGGATAAATACTGATCAGGTTGCGGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAGCCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAAACATGGAGGTGGATCTTTGAGCCAAGCTCCACTAAATATTTATGGATACCCTTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGTAAATTTGGTATAACTTGTAAATTCCATCATCCTCTACCTGCTGCTGGCACATCAATGCCGGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACAGTTCCCCTGCCTGACCAGTATGGGGGAGCATCCACGAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTACAGGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAATCCGTACTCGGCACCTGTAAGTCCTGTATTATCTCCTGGTGCACAACCTGCTGTCGGGACTACTTCTCTATATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCGTACACTCCTCTTCCCTCTTCTACTGGCCCTTTGGGCAGTAACCCAAAGGAACAAGTGTTTCCTGAAAGACCTGGTGAACCTGAATGCCAATATTATCTGAGAACAGGGGATTGTAAATTTGGGTTAGCTTGTCGATATCATCATCCTCGAGACCGGGTAACACAGCCACTTCTCAGCCCCATTGGTCTTCCTCTACGTCCGATCTTGGCTCAGTTATATTGCCCTGAACTTGCCGATTTGTATTTACTGTGGTTCACAATATTTTTTCACCCTGAACATTTGTTCATTCCTCATATGGATAAGTAG 1347 0.4774 MELYGRNPARNGSNPGNQPEWRSPAGDTSLEGVSPSNSVLLSIAFSVFTRCDAVRVLVMWKLGLGVWPNLCSGAESMWHLTLSSSESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVILLKLSALGAVVSGPSNDENPVAWINTDQVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPLPAAGTSMPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWNPYSAPVSPVLSPGAQPAVGTTSLYGVTQLSSSTSAFARPYTPLPSSTGPLGSNPKEQVFPERPGEPECQYYLRTGDCKFGLACRYHHPRDRVTQPLLSPIGLPLRPILAQLYCPELADLYLLWFTIFFHPEHLFIPHMDK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi438g00003 448 ProSiteProfiles Zinc finger C3H1-type profile. 370 398 IPR000571 GO:0046872
Sebi438g00003 448 ProSiteProfiles Zinc finger C3H1-type profile. 166 194 IPR000571 GO:0046872
Sebi438g00003 448 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Sebi438g00003 448 SUPERFAMILY CCCH zinc finger 169 193 IPR036855 GO:0046872
Sebi438g00003 448 SUPERFAMILY CCCH zinc finger 374 399 IPR036855 GO:0046872
Sebi438g00003 448 ProSiteProfiles Zinc finger C3H1-type profile. 212 240 IPR000571 GO:0046872
Sebi438g00003 448 SMART c3hfinal6 370 397 IPR000571 GO:0046872
Sebi438g00003 448 SMART c3hfinal6 212 239 IPR000571 GO:0046872
Sebi438g00003 448 SMART c3hfinal6 166 193 IPR000571 GO:0046872
Sebi438g00003 448 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Sebi438g00003 448 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Sebi438g00003 448 SUPERFAMILY CCCH zinc finger 214 240 IPR036855 GO:0046872
Sebi438g00003 448 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 118 IPR000571 GO:0046872
Sebi438g00003 448 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 193 IPR000571 GO:0046872
Sebi438g00003 448 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 214 238 IPR000571 GO:0046872
Sebi438g00003 448 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 372 397 IPR000571 GO:0046872
Sebi438g00003 448 Gene3D - 361 423 - -
Sebi438g00003 448 Gene3D - 83 131 - -
Sebi438g00003 448 Gene3D - 165 250 - -
Sebi438g00003 448 PANTHER PROTEIN PHOSPHATASE RELATED 84 414 - -
Sebi438g00003 448 MobiDBLite consensus disorder prediction 10 30 - -
Sebi438g00003 448 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi438g00003 Sebi-Chr438 21964 24333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi438g00003 86 414 C2H2 Transcription Factor Family AT5G18550 51.020 8.80e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi438g00003 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi438g00003 - - lja:Lj5g3v1665190.3 628.632