Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi437g00003 ATGGCACAATTACCTTGTGACGACAAAGGGGTGTGTATGGTATGCAAATCTCTCCCAACGGAGGAAGGGAAGCTTGTTTGCTTCACTTGTGTCACCCCTTGGCACGTGGCTTGTCTCTCCTCCCTTCCACCCACCCTTGCCAGCACCATTAACTGGTTGTCAGTGGAGATAGATTCTTATCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGCCCGGAAAGGCCGGCAAGGCGGTTGAAGAAAAAGACAAGAATGAAAATGACAAGTCTGTATCTGATTTTCTCACCAAGGCTCTCAGATGCCCCATTTGCATTCAATTGCCAGAGAGGCCTGTCATGACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCGAGAAATGGATTCAACAAGGGAAAAGAACTTGTAGCATTTGTCGGCAAGATATTCCTGCAAAAATGGCTAACCAACCTCGTAACAATTCTGCATTGGTACATGCCATTCGTATTGCAAAGAAAGACAACAATAATGATAGAGTCGGCGGGTCTTCTCGTGTTCCTCCTTATACGAATAATCAAGATAAACCAGATCAACCATATACGACGGATCGTGCACAGAGGAAGGGTCGTGCTAATGCTGCGAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCCGAGAATGACCCTTTGCATAATAAGGGTCTGGTAGTTGGTGAATCTTGGCCAGATAGGCTGGAGTGCAGGCAATGGGGTGCTCACTTCTTACCAATCGGTGGCATTGCCGAACAATCAGATCGTGGTGCACAATTTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACATAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAACGCACAAACAAGGATCACTCTTTTGACCAGAAGTTTGAAAAGTACAACCGTGCACTCCAGATCAGTTGTCAAGAGGGTTATTCGGTTCGAGTTGTGAGAATTGAAAAGTATTGGCAGATTGCTGGACAACAGGGTTTCAAAGTTTGTCGGTTTCTATTTATAAGATGTGACAATGAACGTGCCCCTTGGACAAGCGATGATCGTGGGGATAGGCCCAAACCCTTGCCAATCATTAATGAGCTACAAAAGGCTACCTTCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTGATGAGGAAGATCTTGTTGGAAATGGAAGAAACCACCACCACCCAGCAGAAAAAAGGGTTCTCATGCCAAATATACAAGCAGGTTATGGATTCACCAGTAACAACACAATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTTTTATGAGAGAGAGAAACATAGGTTTGAAGGGTGTAATTGAGTCACTAAAAGCCAAGGTTGAAGAAAATGGAGAAACGTTAGAGGCAAGTGAAGATGTAGATCGGTTACAAGAAAATGGTGCTGAAGAAACCAGGGGAAAAGGTATAAAAGCTGAGAAAGCAGAAGATGAAGAAAATGTTTCTCCATTAAGTCCTCTCAATATGTCATCAAATGAGTGA 1587 0.4367 MAQLPCDDKGVCMVCKSLPTEEGKLVCFTCVTPWHVACLSSLPPTLASTINWLSVEIDSYLSREEKNKKQQDLMPGKAGKAVEEKDKNENDKSVSDFLTKALRCPICIQLPERPVMTPCGHTFCLKCFEKWIQQGKRTCSICRQDIPAKMANQPRNNSALVHAIRIAKKDNNNDRVGGSSRVPPYTNNQDKPDQPYTTDRAQRKGRANAASGKIFVTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFLPIGGIAEQSDRGAQFVVLSGGYVDDEDHGEWFLYIGSGGKDLTGNKRTNKDHSFDQKFEKYNRALQISCQEGYSVRVVRIEKYWQIAGQQGFKVCRFLFIRCDNERAPWTSDDRGDRPKPLPIINELQKATFIFERTKSPAWDLMRKILLEMEETTTTQQKKGFSCQIYKQVMDSPVTTQCGHNFCKSCLEGAFAGQTFMRERNIGLKGVIESLKAKVEENGETLEASEDVDRLQENGAEETRGKGIKAEKAEDEENVSPLSPLNMSSNE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi437g00003 528 CDD RING-HC_ORTHRUS_rpt1 102 147 IPR047498 -
Sebi437g00003 528 MobiDBLite consensus disorder prediction 167 211 - -
Sebi437g00003 528 MobiDBLite consensus disorder prediction 66 90 - -
Sebi437g00003 528 MobiDBLite consensus disorder prediction 479 515 - -
Sebi437g00003 528 Gene3D - 338 396 IPR036987 -
Sebi437g00003 528 SMART Ubox_2 101 167 IPR003613 GO:0004842|GO:0016567
Sebi437g00003 528 SUPERFAMILY RING/U-box 97 171 - -
Sebi437g00003 528 Pfam RING-type zinc-finger 424 454 IPR027370 -
Sebi437g00003 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 55 337 IPR045134 -
Sebi437g00003 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 500 IPR013083 -
Sebi437g00003 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 171 IPR013083 -
Sebi437g00003 528 ProSiteProfiles YDG domain profile. 233 398 IPR003105 -
Sebi437g00003 528 Pfam SAD/SRA domain 234 362 IPR003105 -
Sebi437g00003 528 Gene3D - 204 337 IPR036987 -
Sebi437g00003 528 SMART ring_2 424 453 IPR001841 -
Sebi437g00003 528 SMART ring_2 104 142 IPR001841 -
Sebi437g00003 528 MobiDBLite consensus disorder prediction 176 195 - -
Sebi437g00003 528 ProSitePatterns Zinc finger RING-type signature. 439 448 IPR017907 -
Sebi437g00003 528 ProSiteProfiles Zinc finger RING-type profile. 104 143 IPR001841 -
Sebi437g00003 528 SUPERFAMILY RING/U-box 420 455 - -
Sebi437g00003 528 SUPERFAMILY PUA domain-like 207 380 IPR015947 -
Sebi437g00003 528 MobiDBLite consensus disorder prediction 479 528 - -
Sebi437g00003 528 SMART G9a_1 228 363 IPR003105 -
Sebi437g00003 528 Pfam Zinc finger, C3HC4 type (RING finger) 102 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi437g00003 Sebi-Chr437 49243 53037 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi437g00003 3 464 C2H2 Transcription Factor Family AT5G39550 48.250 1.48e-165 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi437g00003 K10638 - gmx:100801535 668.307