Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi437g00001 ATGAAAGAAACCACCGCCACCCAGCAGAAAAAAGGTACAATTGAGGAACCTACTAAGATAGAAAAGTCAAGTAAAGGAATAAGGAAATTCCAAAAGATGTCAATCAAGGAACGATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCAGGTTATGGATTCACCAGTAACAACAACATGTGGTCATAATTTCTGTAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTTTTATGGGAGAGAGAAACATAGGTGGGAGAACGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCTACCTGCACTATTGACATCTCTGATTATCTTCAAAACTTTCAGGTTGATATAGCTTTGAAGGGTGTAATTGAGTCACTAAAAGCCAAGGTTGAAGAAAACGGAGAACCGTTAGAGGCAAGTGAAGATGTAGATCGGTTACAAGAAAATGGTGCTGAAGAAACTAGTAAGGCGACAGATTCAGTAGTGAAGCACAATGCAAAAAGAAAGAAATTGATTCTACAAAACAATTACCTAAGATGGGTCATGGTGGATGAACCGTCAGTTCAGACTATGATCGTCAAGGACGTTCACGGTGAGGTATGGAAGCTTAGGCATATAATAAAGGCAGGCCACATTGCCACTTGCTTACAACCGAGTGGAGCAGATTCGTAA 669 0.4111 MKETTATQQKKGTIEEPTKIEKSSKGIRKFQKMSIKERLRKGFSCQICKQVMDSPVTTTCGHNFCKSCLEGAFAGQTFMGERNIGGRTLRSQKNVMKCPTCTIDISDYLQNFQVDIALKGVIESLKAKVEENGEPLEASEDVDRLQENGAEETSKATDSVVKHNAKRKKLILQNNYLRWVMVDEPSVQTMIVKDVHGEVWKLRHIIKAGHIATCLQPSGADS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi437g00001 222 MobiDBLite consensus disorder prediction 1 26 - -
Sebi437g00001 222 ProSiteProfiles Zinc finger RING-type profile. 45 102 IPR001841 -
Sebi437g00001 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 7 139 IPR045134 -
Sebi437g00001 222 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Sebi437g00001 222 MobiDBLite consensus disorder prediction 136 157 - -
Sebi437g00001 222 Pfam RING-type zinc-finger 45 99 IPR027370 -
Sebi437g00001 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 167 IPR013083 -
Sebi437g00001 222 SMART ring_2 45 101 IPR001841 -
Sebi437g00001 222 SUPERFAMILY RING/U-box 37 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi437g00001 Sebi-Chr437 40995 44235 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi437g00001 45 76 C2H2 Transcription Factor Family AT5G39550 53.125 8.33e-06 44.3