Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi434g00010 ATGCCGTTGCCGTGTGACTACTGCGACTCCAAAAGCGCGGTGCTGTATTGCAGAGCAGACTCGGCGAAACTATGCTTAGTGTGCGACCAGCACGTGCACTCCGCCAACGCCCTCTCCCTCAAGCACGTGCGATACCAGATTTGCGAAAACTGCAAAAACGACACCGCTTCGGTTCGATGCTCCACCGACAACCTCCTCCTCTGTAACCGCTGCGACTGGGACGCACACGGCGGCTCCTCTGCTCTCAGCCACCACATCCGCCACCGCCTCGAGGGTCTCTCCGGCGTCCCTTCCGTTCCCGAGATCGTCTCTGTCCTCGGCCTCGATTTGAAGCCCGACGACGTCGTTTCGGTGTCTGACTTCGAGGGTCCAGTGGTTCCCGTTTTTCCGTCGTCGAAGAGTCAGAGCTTGACTTGCGGCAAGCATAGGGATGAGGTGTATGAACAGTTGGTGGAAATTGCGAAGAGGAATAGGAGCCTGTGTGGGGAAGATGTTGAATTCGAATTCAATGATAGTAGCAACGATGTTGGTGATTTGTTGCTGCAGCAAACTACTCCGTTTACTTCTTTGCTCACTTTGCCTTCGGAATTTGACAATGATTTGAGAAAAAACCATGATTATGGAACTGAAGAAGCAGGGGATCTTGTCTGGAATTGTAATCCCCAATATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAGAAATCAAGAGATTGCAATGAAGCAAGAGTGGTGATGTTTGATAGTCTAGAAGAAGCTTCCCTATCGATTCCAAAATCATTGCAAGATATGGACAATATAAATTGCTCTACAATTGATGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGTCATGTGAAGAACAAAGAAGAAAGCAACAAGAAAACTAGAGGTGGGTTATCATCAGATTCCAAATTGGTTGAATCCATAACGTTCAGTAGCACCAACAATGTCGCAGTCATGCAGCATCTTGTGAGTGGGACTGAAAATGTTAGCACCATAAAAACCAAGGTTAGCTTGGAAGAGCTGGCAAAGAATAGAGGGGATGCCATGTTACGCTACAAGGAAAAGAAGAAATCTCGAAGGTACGATAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACGAGAAAGAGGGTGAGGGGGAGATTTGTGAAGGCGAGTGATACAAGTGATGTTCAAGCTTTCTGA 1209 0.4748 MPLPCDYCDSKSAVLYCRADSAKLCLVCDQHVHSANALSLKHVRYQICENCKNDTASVRCSTDNLLLCNRCDWDAHGGSSALSHHIRHRLEGLSGVPSVPEIVSVLGLDLKPDDVVSVSDFEGPVVPVFPSSKSQSLTCGKHRDEVYEQLVEIAKRNRSLCGEDVEFEFNDSSNDVGDLLLQQTTPFTSLLTLPSEFDNDLRKNHDYGTEEAGDLVWNCNPQYQPPQVWDFQLQKSRDCNEARVVMFDSLEEASLSIPKSLQDMDNINCSTIDDILSRNNQSDQSSSSHVKNKEESNKKTRGGLSSDSKLVESITFSSTNNVAVMQHLVSGTENVSTIKTKVSLEELAKNRGDAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKASDTSDVQAF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi434g00010 402 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi434g00010 402 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515
Sebi434g00010 402 MobiDBLite consensus disorder prediction 277 306 - -
Sebi434g00010 402 Pfam CCT motif 351 393 IPR010402 GO:0005515
Sebi434g00010 402 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Sebi434g00010 402 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 395 - -
Sebi434g00010 402 MobiDBLite consensus disorder prediction 288 302 - -
Sebi434g00010 402 CDD Bbox1_BBX-like 4 47 - -
Sebi434g00010 402 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sebi434g00010 402 Pfam B-box zinc finger 44 89 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi434g00010 Sebi-Chr434 322714 325792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi434g00010 3 395 C2C2-CO-like Transcription Factor Family AT2G33500 38.849 7.59e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sebi434g00010 zf-B_box 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi434g00010 - - aprc:113862926 511.531