Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi432g00043 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCACGTTGGATGTGGATCTCCACGAATCTGTAGAAAATGTCAAGGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAACTTCTGTTTAATGGGAAGGAGATGAGGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTCTCTGGTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATGCTGATGGTTCTGCTGTAAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAATGACCCAGAGTTGGCACAAGGTATTCTAGGGAATGATCTCAATAGATTGCAAGAACTTTTACGAATGCGCCATCGCCAGAGAGAAGAATTACAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGAATTGATGAAAATTGGGCAGCTGCACTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACAATAATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCAGCGTTACAAAGGAATTGCTCATGGAGTCGGCCAATCAGAAATATTGGGTCGAATACATGTAGCTCCTATCAAGATTGGGAATATATTTTACCCTTGCTCATTCTTAGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGATTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTAAAAGAAAGTGTTCTGCGAGTTGGTGGAGGAGAAGTTTCAGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTTTAGATGAGGAAAAATATTCCAAGGAAGCTTCAAGCTCAGGTGGCCCAGTTACTTCAGGGAGCAGTAATCCATCACAAGGTGTGCCATCTGGAGGAGCTTCTGGTAATAAGCCTAAGGACTCTGATTTTGAAGCCAAAGTTGCAAAGCTTGTTGAGCTGGGATTTGGAAGAGAAGCTGTTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCAGCTGGGTTTCTCTTTGGGGGCTGA 1218 0.4278 MKITVMTADEQILTLDVDLHESVENVKALLEVETSVPLQQQQLLFNGKEMRNSEKLSALGVKDDDLLMMVSGAAASSGSTNDLSLNADGSAVNPGAFQQHIRRDSNLMGQLFQNDPELAQGILGNDLNRLQELLRMRHRQREELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYSKEASSSGGPVTSGSSNPSQGVPSGGASGNKPKDSDFEAKVAKLVELGFGREAVIQALQLFNGNEEQAAGFLFGG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi432g00043 405 Gene3D Acid Proteases 176 322 IPR021109 -
Sebi432g00043 405 MobiDBLite consensus disorder prediction 329 364 - -
Sebi432g00043 405 CDD UBA_scDdi1_like 368 403 - -
Sebi432g00043 405 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Sebi432g00043 405 SUPERFAMILY UBA-like 358 405 IPR009060 GO:0005515
Sebi432g00043 405 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 362 405 IPR015940 -
Sebi432g00043 405 MobiDBLite consensus disorder prediction 335 356 - -
Sebi432g00043 405 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Sebi432g00043 405 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Sebi432g00043 405 Pfam UBA/TS-N domain 368 401 IPR015940 -
Sebi432g00043 405 FunFam DNA damage inducible 1 homolog 2 175 322 - -
Sebi432g00043 405 Gene3D - 368 403 - -
Sebi432g00043 405 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sebi432g00043 405 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sebi432g00043 405 SMART uba_6 367 404 IPR015940 -
Sebi432g00043 405 SMART ubq_7 1 72 IPR000626 GO:0005515
Sebi432g00043 405 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Sebi432g00043 405 CDD RP_DDI 182 305 IPR019103 GO:0004190|GO:0006508
Sebi432g00043 405 Coils Coil 127 150 - -
Sebi432g00043 405 SUPERFAMILY Acid proteases 183 298 IPR021109 -
Sebi432g00043 405 Gene3D - 1 83 - -
Sebi432g00043 405 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 402 - -
Sebi432g00043 405 Pfam Aspartyl protease 175 297 IPR019103 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi432g00043 Sebi-Chr432 815734 822652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi432g00043 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 7.43e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi432g00043 K11885 - gmx:100779464 680.633