Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi432g00042 ATGGGATCCTCGGGAGGAAATAGGAATCTTGACTATTTCGTAGCTAAGTTGACCCCTCATGAGGATATGCTGTTTATAGATAATATGTTTTGGTTGAAGTTTCGAGACGAACTTAGGGGTCGCAACCTTATCCTATTGGACCCTGTTGGGTTTAGGTTTAATGTGTCTGTAGAGAAGTATGGGTACAATGGTCGTGGAATTATTACTGGAGTTGAAAACATAGTAGAACGCTATAACCTGGCTGATAGTTACTGGGTGTTTTTTAAATATAAAGGGGACTGTAAGTTTGACATTAGAGTAGCATTAGGAGATTTCGAGGTTAATTATCATAGGGTGGAAAGTGATAAACATGATGATGTCCAACCTGTGGAGAATGAGGATGACCCTGAGGAGGGCCCTGAGGAACCCCTTTTTATGTGGGAAATTACTTTGACAAAGGCAGCTGCATCCGGTGCTAACGCTTTGGTCATACCTGCTAGGATTGTGAGGGACATATTGGACAAGAATCAGGAAGTTGTGAATGTTATAGATGAGGGTGGTGAATTAATTCCATGCAAGCTTCTGAAGCCTAAAAGACGACCAAGTGAACGGTACCTATCCAGTGGGTGGTATGATTTTATTCGGGGAAAGAAATTGAAGGCTGGTGATAAGATAAGATTTTACTCAGATGATAGTATGAAATCTTTGTCTGCGGTTGTAGATTGCATTTGA 711 0.4107 MGSSGGNRNLDYFVAKLTPHEDMLFIDNMFWLKFRDELRGRNLILLDPVGFRFNVSVEKYGYNGRGIITGVENIVERYNLADSYWVFFKYKGDCKFDIRVALGDFEVNYHRVESDKHDDVQPVENEDDPEEGPEEPLFMWEITLTKAAASGANALVIPARIVRDILDKNQEVVNVIDEGGELIPCKLLKPKRRPSERYLSSGWYDFIRGKKLKAGDKIRFYSDDSMKSLSAVVDCI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi432g00042 236 SUPERFAMILY DNA-binding pseudobarrel domain 136 228 IPR015300 -
Sebi432g00042 236 SMART B3_2 13 106 IPR003340 GO:0003677
Sebi432g00042 236 SMART B3_2 140 232 IPR003340 GO:0003677
Sebi432g00042 236 Gene3D - 133 235 IPR015300 -
Sebi432g00042 236 SUPERFAMILY DNA-binding pseudobarrel domain 10 99 IPR015300 -
Sebi432g00042 236 ProSiteProfiles B3 DNA-binding domain profile. 140 236 IPR003340 GO:0003677
Sebi432g00042 236 CDD B3_DNA 143 225 IPR003340 GO:0003677
Sebi432g00042 236 Pfam B3 DNA binding domain 142 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi432g00042 Sebi-Chr432 808338 809235 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi432g00042 B3 1.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi432g00042 - K14486 vun:114170692 59.6918