Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi431g00062 ATGCCGCCACGTGGGGTGAAACTCAGTATTCAAGATAATCATGTGATGATGGACAATGGCATACTAAAAGTCACCTTATCAAATCCAGATGGGATTGTCACTGGAATACAGTATAAAGGCATTGATAACTTGCTTGAAGTTTTGAACCAAGAATCAAACAGAGGGTACTGGGACCTTGTTTGGGGCTCACCAGGAACCAAGAGTACATTTGATGTGATAAAGGGAACCACTTTAAAAGTTATATTGGAAAGTGAGGACCAAGTTGAGTTATCCTTCACCAGGATGTGGGATGCCTCCCTTGAGGGAAATATGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCTTCTGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGAACTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTACATGGCGATGGCAGATAATAGACAAAGAAACCTGCCTCTTCCAGATGATCGATCACCACCAAGAGGCCAAGCCCTTGCCTACCCAGAGGCAGTTCTACTTGTCGATCCTATTGAGCCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAACAAAGTTCACGGATGGATTTGCAAGGATCCGGCTGTGGGATTCTGGCAAATTACGCCTACCAATGAGTTTCGATCTGGTGGACCCCACAAACAAAACTTAACTTCCCACGTCGGACCTACCACCCTTGCTATGTTTCTGAGTGCTCATTATAGCGGAGAAGATTTGATACCTAAGTTCAACGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTCTTGATAAAGGACGTGACCCTCTTAAGCTATGGGATGATGCTAAACGACAGATGTTGGTGGAAGTTCAAAGCTGGCCCTACAATTTTCCCAAATCAAAGGATTTCCCAAAGAGGAAGGAGCGTGGAAATGTTAGTGGCAGGCTATTGGTTAGAGAGAGGTATATACACGATGACAGTGTACCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCAGGAGATGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGACAATGGCTATTTCTCCATCAGCAATATACATGCTGGCGACTATAATCTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGATATGAATATAACAAAAGGTAGTGACATAAACATTGGTGATCTTGTGTATGAACCTCCAAGAGATGGTCCAACATTATGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTTTATGTTCCTGATCCAAATCCCCAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACAAAGACTTGATCTACACCATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACGTGGCAAATCAAGTTTAAGCTTGACAATGTGAACAAAAGCAGTAGCTATAAACTGCGAGTGGCTCTTGCATCAGCAACATTATCTGAACTTCAGGTTCGAGTAAATGATCCAAAGGCTAGTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGGCATGGAATTCATGGGCTTTATTGGCTTTACAATGTGGACATACCAAGTGCTCAACTTGTTAAAGGAGATAACACCATCTTTTTGACACAGACAAGAGGCAATGGCCCATTTCAAGCCCTTATGTATGACTATATTCGTTTGGAAGGTCCAGCACTTGTCTAG 1905 0.4173 MPPRGVKLSIQDNHVMMDNGILKVTLSNPDGIVTGIQYKGIDNLLEVLNQESNRGYWDLVWGSPGTKSTFDVIKGTTLKVILESEDQVELSFTRMWDASLEGNMVPLNIDKRFIMLRGSSGFYSYAIYEHLENWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNLPLPDDRSPPRGQALAYPEAVLLVDPIEPELKGEVDDKYQYSCDNKDNKVHGWICKDPAVGFWQITPTNEFRSGGPHKQNLTSHVGPTTLAMFLSAHYSGEDLIPKFNAGEAWKKVFGPVFIYLNSLDKGRDPLKLWDDAKRQMLVEVQSWPYNFPKSKDFPKRKERGNVSGRLLVRERYIHDDSVPAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDNGYFSISNIHAGDYNLYAWVPGFIGDYKYDVDMNITKGSDINIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKSSSYKLRVALASATLSELQVRVNDPKASRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPSAQLVKGDNTIFLTQTRGNGPFQALMYDYIRLEGPALV 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi431g00062 634 CDD RGL4_N 6 294 - -
Sebi431g00062 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Sebi431g00062 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Sebi431g00062 634 SUPERFAMILY Starch-binding domain-like 333 427 IPR013784 GO:0030246
Sebi431g00062 634 SUPERFAMILY Galactose mutarotase-like 9 291 IPR011013 GO:0003824|GO:0005975|GO:0030246
Sebi431g00062 634 Pfam Rhamnogalacturonate lyase family 10 200 IPR010325 -
Sebi431g00062 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 632 - -
Sebi431g00062 634 Gene3D - 6 297 IPR014718 GO:0030246
Sebi431g00062 634 CDD RGL4_C 442 629 - -
Sebi431g00062 634 Gene3D - 438 629 - -
Sebi431g00062 634 CDD RGL4_M 331 430 IPR029413 -
Sebi431g00062 634 Gene3D - 328 427 - -
Sebi431g00062 634 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Sebi431g00062 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi431g00062 Sebi-Chr431 783912 788239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi431g00062 6 632 Polysaccharide Lyase AT1G09890 70.523 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi431g00062 K18195 - gmx:100793563 1172.15