Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi431g00054 ATGAAGGTAGTTTGTCCTCATATACCATTAATGTATTCCTTGTTACTTCGGCGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTGGTGAGTCTCATCCAATTTGTGGTTGGTAAGCGTTTTTACATTGCAGCTGGCAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGATTGCTGTGGGAACTACTGCCTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTCACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCTAAGGGAAAGACATCTGATGCCATAAAAAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTAGTTGTCAAAGATAAAGGTGGTAAATCTGTTGAAGAAAGGGAAATTGATTCTTTGCTTGTTCAACCTGGTGACACATTGAAAGTTCTTCCTGGTTCAAAGGTTCCTGCTGATGGTATCGTTACTTGGGGTTCAAGTTATGTGAATGAGAGCATGGTAACTGGTGAGTCCATACCTGTTTTGAAGGAGGTGAATGCTTCTGTTATTGGAGCCCAGATGTCTAAAGCTCCTATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCAACAGTTGTTTCTTTGGCATTATTGACATTATTGGGTTGGTATATTGCTGGATCTATTGGAGCTTACCCAGAAGAGTGGCTGCCAGAACATGGAAATCACTTTGTTTTTGCCCTGATGTTCTCAATATCTGTGGTGGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCAACAGGGGTTGGGGCTAACAATGGAGTATTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTATGTAGTATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCTACTGTTACTACTGCCAAGGTATTCACTGGAATGCAACGTGGGGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCAAAAGCAATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCAGATACTACTGGTACCCAGAATGATATAAAGTCTGGGTGGCTCTCTGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGAGGTGTCCAATGCTTTATAGATGGGAAGCGTACTTTGGTTGGTAACAGGAAGTTGATGGCCGAAAGTGGTATAGATATTTCAACAGAAGTGGAAAATTTTGTGATTGAGCTGGAACAAAGTGCAGAGACGGGGATACTGGTAGCATATGATGATATATTAATTGGAGTTTTAGGGGTAGCAGACCCACTAAAGAGAGAAGCTTCTGTAGTTATAGAGGGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCATGCTGTTGCCAAGGAGGTTGGTATTCAAGACGTCAGGGCAGAGGTTATGCCTGCCGGAAAGGCGGACATTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGCTGCTGCTGATATTGGCATGGCAATTGGGGCTGGAACTGATGTTGCAATAGAAGCTGCCGACTTTGTGTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATCCATCTTTCCAGGAAAACCTTCTCTCGCATTCGATTGAATTACGTATTTGCCATGGCTTACAATGTGGTGGCTATACCAGTTGCTGCTGGGGTTTTATATCCTTCACTGGGGATCAAGCTGCCACCGTGGGTTTCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCCTTGCTTCTTAAAAGATATAGAAGACCTAGACTTACTACAGTACTTGAAATAATTGTAGAATAA 1974 0.4271 MKVVCPHIPLMYSLLLRRCGPFLMGDWLKWALVSLIQFVVGKRFYIAAGRALRNGSTNMDVLIAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKSVEEREIDSLLVQPGDTLKVLPGSKVPADGIVTWGSSYVNESMVTGESIPVLKEVNASVIGAQMSKAPIQKFADYVASIFVPTVVSLALLTLLGWYIAGSIGAYPEEWLPEHGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVVFDKTGTLTQGKATVTTAKVFTGMQRGEFLTLVASAEASSEHPLAKAILAYARHFHFFDDSSDTTGTQNDIKSGWLSDVSDFSALPGRGVQCFIDGKRTLVGNRKLMAESGIDISTEVENFVIELEQSAETGILVAYDDILIGVLGVADPLKREASVVIEGLQKMGVIPVMVTGDNWRTAHAVAKEVGIQDVRAEVMPAGKADIVRSFQKDGSIVAMVGDGINDSPALAAADIGMAIGAGTDVAIEAADFVLMRNNLEDVITAIHLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTTVLEIIVE 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi431g00054 657 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 203 652 - -
Sebi431g00054 657 FunFam Copper-exporting P-type ATPase 411 462 - -
Sebi431g00054 657 SUPERFAMILY Calcium ATPase, transmembrane domain M 79 606 IPR023298 -
Sebi431g00054 657 FunFam Probable copper-transporting ATPase HMA5 431 588 - -
Sebi431g00054 657 ProSitePatterns E1-E2 ATPases phosphorylation site. 316 322 IPR018303 -
Sebi431g00054 657 Gene3D - 113 218 - -
Sebi431g00054 657 PRINTS H+-transporting ATPase (proton pump) signature 503 519 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi431g00054 657 PRINTS H+-transporting ATPase (proton pump) signature 531 547 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi431g00054 657 PRINTS H+-transporting ATPase (proton pump) signature 562 587 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi431g00054 657 Gene3D - 411 462 IPR023299 GO:0000166
Sebi431g00054 657 Gene3D - 321 410 IPR023299 GO:0000166
Sebi431g00054 657 SFLD p-type atpase 296 583 IPR044492 -
Sebi431g00054 657 Pfam E1-E2 ATPase 128 201 - -
Sebi431g00054 657 Pfam E1-E2 ATPase 195 293 - -
Sebi431g00054 657 SUPERFAMILY HAD-like 313 637 IPR036412 -
Sebi431g00054 657 CDD P-type_ATPase_Cu-like 8 627 - -
Sebi431g00054 657 NCBIfam HAD-IC family P-type ATPase 98 341 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi431g00054 657 NCBIfam HAD-IC family P-type ATPase 412 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi431g00054 657 Gene3D - 281 588 IPR023214 -
Sebi431g00054 657 SUPERFAMILY Calcium ATPase, transduction domain A 145 197 IPR008250 -
Sebi431g00054 657 FunFam Copper-transporting ATPase 1, putative 113 214 - -
Sebi431g00054 657 SFLD C1.7: P-type atpase like 296 583 - -
Sebi431g00054 657 FunFam Copper-transporting ATPase RAN1 321 410 - -
Sebi431g00054 657 NCBIfam heavy metal translocating P-type ATPase 202 640 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi431g00054 657 PRINTS P-type cation-transporting ATPase superfamily signature 314 328 - -
Sebi431g00054 657 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Sebi431g00054 657 PRINTS P-type cation-transporting ATPase superfamily signature 531 550 - -
Sebi431g00054 657 PRINTS P-type cation-transporting ATPase superfamily signature 554 566 - -
Sebi431g00054 657 PRINTS P-type cation-transporting ATPase superfamily signature 456 467 - -
Sebi431g00054 657 PRINTS P-type cation-transporting ATPase superfamily signature 478 488 - -
Sebi431g00054 657 Pfam haloacid dehalogenase-like hydrolase 310 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi431g00054 Sebi-Chr431 698640 703749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi431g00054 1 657 Primary Pumps ATPases AT5G44790 74.638 0.0 1040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi431g00054 K17686 - gmx:100804960 1174.07