Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi431g00053 ATGGCTCCCGGTGTCAGAGACCTTGAGCTCACTTCCCTTGCCGGCGGCCTGAAAATCGCCGGCGATGACTCCGATGACCTCGAGGATGTGCGGCTCCTGGACTCCTACGATAATATTGACGACGGGATGAGGCGAATTCAGGTGAGGGTCTCCGGTATGACCTGCGCCGCTTGCTCCAATTCTGTCGAATCAGCTCTCAAAGCCGTCGACGGCGTTCTCAGCGCCTCCGTCTCCTTGCTACAGAACAAAGCTGACATCGTTTTCAACCCGGCTCTGCTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGACATATTACCTGAATCCGGTACACTTGGAAAGATTCCACATGGAACTCTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCCTGTGTGAATTCCGTTGAAGGTATTTTGAGAAATCTTCCTGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCATTAGGCGAAGTTGAATATGATTCCAGTGTAATTAGTAAAGATGATATAGTCAATGCAATTGAAGATTCTGGTTTCGAAGCTTCATTTGTACAGAGCAGTGAGCAGGATAAAATAGTTTTAGGGGTTGTTGGCGTGTACAGTCTGATTGATGCACAAGTTTTAGAAGGCATGCTTAGCAGCGTGAAAGGAGTAAAGCAGTTTCATTTTGATCAGATATCAGGTGAATTAGATGTCCTGTTTGATCCTGAAGTTCTCAGCTCTAGATCCTTAGTTGATGGGATCCAGGAGGGAAGCAATGGAAAGTTTAAATTACATGTTCGAAGCCCTTATACAAGGATGGCTTCTAAAGATGTCGAAGAGGCCTCAACTATGTTTCGGCTCTTTATCTCCAGCCTGCTTCTTAGTCTGTGCCCTAACCAGCTGCTCCACTCCCGGAGACCACCACCACCGGACCCAGACACCGCCGACGACCCGGAATCCGAAGCCCCGCCACCATCCGCCGCCGCACGCGCCGTCACCTTTCTCTGCACGTTTTCCGCACGCGTCGGCGCGTCTGAGCGCGTCTCTTACATTCCGGCCACCGTTTCACGCCAGCGACCACCGAAGGAGGCCGTTCTACCTCTGTTTGGTCCTAATCCACTCCCTGCAATGTGTTTTTCATCTCCTCTGAGCCTCCGATCATGA 1176 0.5017 MAPGVRDLELTSLAGGLKIAGDDSDDLEDVRLLDSYDNIDDGMRRIQVRVSGMTCAACSNSVESALKAVDGVLSASVSLLQNKADIVFNPALLKDEDIKNAIEDAGFEADILPESGTLGKIPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDSSVISKDDIVNAIEDSGFEASFVQSSEQDKIVLGVVGVYSLIDAQVLEGMLSSVKGVKQFHFDQISGELDVLFDPEVLSSRSLVDGIQEGSNGKFKLHVRSPYTRMASKDVEEASTMFRLFISSLLLSLCPNQLLHSRRPPPPDPDTADDPESEAPPPSAAARAVTFLCTFSARVGASERVSYIPATVSRQRPPKEAVLPLFGPNPLPAMCFSSPLSLRS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi431g00053 391 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Sebi431g00053 391 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Sebi431g00053 391 SUPERFAMILY HMA, heavy metal-associated domain 125 197 IPR036163 GO:0046872
Sebi431g00053 391 Gene3D - 43 114 - -
Sebi431g00053 391 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872
Sebi431g00053 391 MobiDBLite consensus disorder prediction 307 330 - -
Sebi431g00053 391 SUPERFAMILY HMA, heavy metal-associated domain 40 113 IPR036163 GO:0046872
Sebi431g00053 391 CDD HMA 129 192 IPR006121 GO:0046872
Sebi431g00053 391 ProSitePatterns Heavy-metal-associated domain. 50 79 IPR017969 GO:0046872
Sebi431g00053 391 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 38 300 - -
Sebi431g00053 391 CDD HMA 47 109 IPR006121 GO:0046872
Sebi431g00053 391 FunFam Copper-exporting P-type ATPase A 125 194 - -
Sebi431g00053 391 Gene3D - 128 193 - -
Sebi431g00053 391 NCBIfam copper ion binding protein 129 191 IPR006122 GO:0005507
Sebi431g00053 391 NCBIfam copper ion binding protein 46 109 IPR006122 GO:0005507
Sebi431g00053 391 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Sebi431g00053 391 Pfam Heavy-metal-associated domain 48 108 IPR006121 GO:0046872
Sebi431g00053 391 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Sebi431g00053 391 PRINTS Copper-transporting ATPase 1 signature 100 120 - -
Sebi431g00053 391 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Sebi431g00053 391 FunFam Copper-exporting P-type ATPase A 42 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi431g00053 Sebi-Chr431 691985 694649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi431g00053 1 303 Primary Pumps ATPases AT5G44790 63.804 1.34e-128 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi431g00053 K17686 - gmx:100804960 482.641