Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi431g00017 ATGGTTGAGATTGAGAATATGAAGAGAAGCAACTTTGAAGTGTTGGGAATGTGCTGTGCTACAGAAGCAGCACTTGTTGAAAGAATTCTGAAGCCTTTTCATGGAGTCAAATATGTCTCAGTGATAGTTCCTACCCGAACAGTCACCGTGGTCCATGATGTCCTCCTTACTTCTGAGTCACAAATAGCTGATGCACTGAATACGGCAAGGCTTGAAGCTAGTTTTAGACCACAGGGAGAGATCAATGATGGAAAGAAATGGCCAGACTTACCTACAATGGCCTCTGGCTTGTTACTGGCACTTTCTTTCTTGAAGTATATATATCCCCCTTTGGGATGGTTGGCTCTTGGTTCTATTGCCATTGGCTTCCCTAAAATTCTATTCAGGGCCATAGCTTCCATCAGGGCTCTTACTCTTAATATCAACATTCTGGTTCTACTGTCAGTGTGTGGTACTGCTGCTTTACAGGATTTTACAGATGGTGGAGTCATCATCTTCCTGTTTTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAATGGTTGCAATGTCCTCTTTAACGAGCATGGCTCCTCAAAAGGCCATTATTGCTGAGACTGGAGAGCGTGTTGATGTCAGTGATGTTAAGATCAACACCATCCTTGCTGTCAAGGCTGGTGATACTATTCCTCTTGATGGAGTCGTTGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTCCCTGTCACCAAAGAATTAGATTCATTAGTCTGGGCTGGAACTATTAACCTGAATGGATATATAAGTGTAAAAACTACCGTGTTGGCAAAAGACACGGTGGTGGCAAGAATGTCAAAACTTGTTGAAGAGGCTTCTAGCAGAAAATCTCGAGCACAAAGATTCATAGATAAATTTTCAAAGTACTATATTCCTGTGGTTGTCTTGATTTCAGCTAGCATTGCTGTGGTACCAGCTGCATTAGGAGTTCCTGATTTTGACCCTTGGTTTCATCTGGCAATTGTGGTTTTATTGAGTGGATGCCCTTGTGCTCTCATCCTCTCAACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGTTTACTACTGAAAGGTGGAGATTATCTTGAAACGCTTTCTGGAATCAAGACAGTGGCTTTTGATAAAACAGGCACAATAACAAGAGGAGAGTTCACTGTATCAGACTTTAGTGCTGTAGATGACATTAGCATTGAAACCTTATTATACTGGGTTTCAAGTATTGAGAGTAAATCAAGTCATCCAATGTCAGCTGCACTAGTGGAATATGGAATGTTGCACTCTATAAAACCAGTCCCAGAAAATGTAGAGAATTTTCAAAATTTTCCAGGGGAAGGAATTTCTGGCACAATTGATGGGAGAGATATTTATATAGGCAATAGGAGAATTGCTGTCAGAGCTGGCTGTGAAAGTGTCGATTGCCATGTGCAAGTTGAAAGCCATGAGATTTCTACCCAGAAGCAATACTGTGAACCAACTCTAGTTGGAGTCTTCAGCCTAGTTGATAGTTGCAGATCAGGTGCTTTGGAGGCAATAGAAGAGCTAAAGTTATTAGGCGTCAGATCAGCCATGCTGACAGGAGATAGCGCTCGGGTTGCTATGTATGTTCAGAGTCAGTTGAACCATGCTCTGGACATTGTTCATGCAGAACTTCTACCTCATGAAAAGGCAATGATTATTGAGAATTTCAAGAAAGATGGGCTAACAGCCATGATTGGAGATGGCATTAATGATGCTCCTGCATTAGCTGCAGCTGACATTGGCATCTCAATGGGAATATCAGGTTCAGCACTTGCTAATGAGACAGGCAATGCAATTCTCATGTCAAATGACATCAGAAAAATACCTGAAGCCATTAGGCTAGCAAGAAAAACTATTAGAAAGCTCATTGAGAATGTCATTATTTCAATTGGCTCCAAGAGTGCCATACTGGCATTGGCAATTGCAGGATATCCATTAGTTTGGCTTGCTGTGTTGACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTGCAAGAGAAACCAAAATATGAAAGAAAATCTACAAGGCCTAAATACGGCAACTTCTTGGAAGATAAGACCGTGACTCTACTTGACAAGCAAAGTAATGGTGATGAGAACCAAGGGCTTCTTAGTGCTGAAAAGTGTGGTAGAGTGCTGTAA 2229 0.4145 MVEIENMKRSNFEVLGMCCATEAALVERILKPFHGVKYVSVIVPTRTVTVVHDVLLTSESQIADALNTARLEASFRPQGEINDGKKWPDLPTMASGLLLALSFLKYIYPPLGWLALGSIAIGFPKILFRAIASIRALTLNINILVLLSVCGTAALQDFTDGGVIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAIIAETGERVDVSDVKINTILAVKAGDTIPLDGVVVEGKCEVDEKMLTGESFPVTKELDSLVWAGTINLNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRAQRFIDKFSKYYIPVVVLISASIAVVPAALGVPDFDPWFHLAIVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSGIKTVAFDKTGTITRGEFTVSDFSAVDDISIETLLYWVSSIESKSSHPMSAALVEYGMLHSIKPVPENVENFQNFPGEGISGTIDGRDIYIGNRRIAVRAGCESVDCHVQVESHEISTQKQYCEPTLVGVFSLVDSCRSGALEAIEELKLLGVRSAMLTGDSARVAMYVQSQLNHALDIVHAELLPHEKAMIIENFKKDGLTAMIGDGINDAPALAAADIGISMGISGSALANETGNAILMSNDIRKIPEAIRLARKTIRKLIENVIISIGSKSAILALAIAGYPLVWLAVLTDVGTCLLVILNSMLILQEKPKYERKSTRPKYGNFLEDKTVTLLDKQSNGDENQGLLSAEKCGRVL 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi431g00017 742 Gene3D - 381 640 IPR023214 -
Sebi431g00017 742 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Sebi431g00017 742 FunFam Copper-transporting ATPase 1, putative 179 293 - -
Sebi431g00017 742 NCBIfam HAD-IC family P-type ATPase 163 670 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi431g00017 742 SUPERFAMILY Calcium ATPase, transmembrane domain M 141 384 IPR023298 -
Sebi431g00017 742 FunFam Putative cadmium/zinc-transporting ATPase 3 4 77 - -
Sebi431g00017 742 CDD HMA 12 74 IPR006121 GO:0046872
Sebi431g00017 742 CDD P-type_ATPase_HM 92 691 - -
Sebi431g00017 742 Gene3D - 401 521 IPR023299 GO:0000166
Sebi431g00017 742 Gene3D - 179 293 - -
Sebi431g00017 742 NCBIfam heavy metal translocating P-type ATPase 141 691 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi431g00017 742 SUPERFAMILY HAD-like 388 690 IPR036412 -
Sebi431g00017 742 SUPERFAMILY Calcium ATPase, transduction domain A 204 289 IPR008250 -
Sebi431g00017 742 SUPERFAMILY HMA, heavy metal-associated domain 4 79 IPR036163 GO:0046872
Sebi431g00017 742 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Sebi431g00017 742 FunFam Putative cadmium/zinc-transporting ATPase 3 401 521 - -
Sebi431g00017 742 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 696 - -
Sebi431g00017 742 SFLD Haloacid Dehalogenase 373 642 - -
Sebi431g00017 742 Gene3D - 3 76 - -
Sebi431g00017 742 ProSitePatterns Hypothetical cof family signature 2. 589 611 - -
Sebi431g00017 742 Pfam haloacid dehalogenase-like hydrolase 386 603 - -
Sebi431g00017 742 PRINTS P-type cation-transporting ATPase superfamily signature 535 545 - -
Sebi431g00017 742 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Sebi431g00017 742 PRINTS P-type cation-transporting ATPase superfamily signature 239 253 - -
Sebi431g00017 742 PRINTS P-type cation-transporting ATPase superfamily signature 513 524 - -
Sebi431g00017 742 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Sebi431g00017 742 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Sebi431g00017 742 Pfam E1-E2 ATPase 200 368 - -
Sebi431g00017 742 NCBIfam cadmium family heavy metal-translocating P-type ATPase 141 693 - -
Sebi431g00017 742 SFLD p-type atpase 373 642 IPR044492 -
Sebi431g00017 742 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi431g00017 742 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi431g00017 Sebi-Chr431 142941 147357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi431g00017 5 733 Primary Pumps ATPases AT4G30110 59.264 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi431g00017 K01534 - gmx:100815324 1221.45