Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi430g00021 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACGCCTTGATCGACGATATTCCCGTCCCCGATGGCTCCTTCACCGTCTCAGCATCTGCTTTCACCTGGCCCCCACCACAACCCTCCAATGTCGGTGTTGAAATTGATGGCTCCCTGGGGGATTCTGATGGTCTCAAAGATCCTGGTGTGAAGAAGAGGGGTAGATCTGATTCATGTACTGCTTCTAGCTCTAAGGCATGTCGAGAGAAGTTGCGGAGGGATAGGCTGAATGACAAGTTTGTTGAGTTAGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCTATTCTTATTGATGCTGTCAGAATGGTGACACAGTTGAGGGGTGAAGCCGAGAAGTTGAAAGACTCAAATATAAGCCTTCAAGAGAAGATTAAAGAGCTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGGTGAAATCAATGAATGTCCAAACTCAACCTGGTTTCTTACCACCACCTCCTGCAATTCCTGCTGCATTTGCTCCTCAAGGCCAAGCCCCCGGCAACAAGTTGGTCCCTTTTATTAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCTGCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 708 0.4873 MVSPENTNWLFDYALIDDIPVPDGSFTVSASAFTWPPPQPSNVGVEIDGSLGDSDGLKDPGVKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAEKLKDSNISLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKSMNVQTQPGFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi430g00021 235 CDD bHLH_AtILR3_like 77 152 - -
Sebi430g00021 235 Coils Coil 120 175 - -
Sebi430g00021 235 MobiDBLite consensus disorder prediction 162 193 - -
Sebi430g00021 235 Gene3D - 75 150 IPR036638 GO:0046983
Sebi430g00021 235 Pfam Helix-loop-helix DNA-binding domain 76 123 IPR011598 GO:0046983
Sebi430g00021 235 PANTHER BHLH TRANSCRIPTION FACTOR 4 235 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Sebi430g00021 235 CDD bZIP 138 170 - -
Sebi430g00021 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983
Sebi430g00021 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 142 IPR036638 GO:0046983
Sebi430g00021 235 FunFam Transcription factor bHLH34 63 121 - -
Sebi430g00021 235 SMART finulus 78 129 IPR011598 GO:0046983
Sebi430g00021 235 MobiDBLite consensus disorder prediction 35 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi430g00021 Sebi-Chr430 482480 484834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi430g00021 1 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.500 3.12e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi430g00021 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi430g00021 - - ccaj:109815088 384.8