Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi42g00020 ATGTCAGGAGGCTCAAGTATCTACATCCCTGTAAGGGAAATTGCACCACATAAGGAAAATTGGATGATATGTGCCAGGATTATTAGAATTTGGACCGTCACAGATTGCAGGAACAAGTCTCGTGTGTTGTCTTACGAGATAGTGTTCATTGACCGACAGGGTGACAAGATCCAGGCTTCAATTAGCAAACAGTTGGTCATCATTAAGAATCTTCACTTGGATGAAGAAGACTTCTATGATATGAAGGATGTCCTTGTGGTGCCTAATGATGGTAGTGACCGACCAAGTCACCATCCTTTTCGATTGGTTATTGAAAGGCGATCATTAGTTGCGAAGGCTGAGCCACTTCCATATACATCTTATGGTCTATCACCGCTTAATTGTTCTGATATTGTGTGGACAAAATTTCAAACTGAATTTCTCATGGACAAACTTGGTTTAGTCACTTCTGTCTCTTGCGAACGAGAATATATAATGGATGACAAAGAAATTAGATTGGCATTTCTGGAAATTACCGACCCCACTGGGAAGGTTGAATGTGTACTCTATGATCAATATGTGGGCGAACTTATTCATTTCCTGAAAACTAATGGGCCCTGCACCCCAATCATTTTGCTCCAGTTTGCAGAAGTTGTTCCAGACGCCCAAGTTCTTTTTGGGGATGTTGGAATTAAGAGTATTCCAGATATCAGTCGTATGTTATTCAACCCGCCCATACCAGAGGCCTTTGATATGAATGGCTGGTTAACAATGAGTGGGATAAGTCTTGAGGGGAAAATCCAGTTCCGTCAAATGGAAATTCCATGCCTTACTTTGCGTGATGAGTTCCTCCTTCACCACAAAAAGAGTGATATATGTGATCTAAATACCAATGGAGAGGGTGGCCTATTTGTTGTTTGTGCTATCATCACATTGTTGTTGGAGAATAAGGCATGGTGGTACACTGCATGTAGACCTCATGCTTGCAGCTCAAAGGGTAGTTCCCTGTACACCTGTGATGGTGATTACTCCATTATTCCAAGGTATTATGTGAAGGTCGAAGTGTGTGACGAAACAGCTTTAACGTACCTACTTCTGGGAGATGAACATATAGAGAAATTGATGCAGATGTCGTGCAGAGATATGTTGTCCAAATTGGAGACGACAAGGAGCACTAACGTCCATGAGGGTTGCCTTAGGGTGAAAACCTTATGCATTGATAGGGAATTGATTCGGATGTGGTTGAAGGGACAATATTTTCGTGTTGATCGAAGGCCACGGAAAACAATAGCAGCCATGTTAGGTGCGACCAGAAATGCAGCCCCATTCAGCCATGCAGAGTGTAGTTCATACGCAAGTGCTCGCCCAGTAGACAATTTCCCCACTGCAAGTTCAGCTGCCGGTCACCAGTCTGCAGGTGGTAGTGCTTCCATCAACAACAACCACGAAACAAACCCTGCTCCGCACAACACCCCCCAAGTTGACAAGCATTGTGTCCACGTCATACAAAGGTCACAGGAAGGGTGA 1506 0.4369 MSGGSSIYIPVREIAPHKENWMICARIIRIWTVTDCRNKSRVLSYEIVFIDRQGDKIQASISKQLVIIKNLHLDEEDFYDMKDVLVVPNDGSDRPSHHPFRLVIERRSLVAKAEPLPYTSYGLSPLNCSDIVWTKFQTEFLMDKLGLVTSVSCEREYIMDDKEIRLAFLEITDPTGKVECVLYDQYVGELIHFLKTNGPCTPIILLQFAEVVPDAQVLFGDVGIKSIPDISRMLFNPPIPEAFDMNGWLTMSGISLEGKIQFRQMEIPCLTLRDEFLLHHKKSDICDLNTNGEGGLFVVCAIITLLLENKAWWYTACRPHACSSKGSSLYTCDGDYSIIPRYYVKVEVCDETALTYLLLGDEHIEKLMQMSCRDMLSKLETTRSTNVHEGCLRVKTLCIDRELIRMWLKGQYFRVDRRPRKTIAAMLGATRNAAPFSHAECSSYASARPVDNFPTASSAAGHQSAGGSASINNNHETNPAPHNTPQVDKHCVHVIQRSQEG 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi42g00020 501 SUPERFAMILY Nucleic acid-binding proteins 128 256 IPR012340 -
Sebi42g00020 501 CDD RPA1_DBD_A_like 22 102 - -
Sebi42g00020 501 Gene3D - 279 395 IPR012340 -
Sebi42g00020 501 Gene3D - 127 254 IPR012340 -
Sebi42g00020 501 MobiDBLite consensus disorder prediction 455 484 - -
Sebi42g00020 501 MobiDBLite consensus disorder prediction 455 488 - -
Sebi42g00020 501 SUPERFAMILY Nucleic acid-binding proteins 284 384 IPR012340 -
Sebi42g00020 501 Gene3D - 7 112 IPR012340 -
Sebi42g00020 501 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi42g00020 Sebi-Chr42 1292326 1294939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi42g00020 9 368 Core DNA Replication Machinery Family AT2G06510 22.362 2.03e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi42g00020 - - mtr:11425976 206.838