Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi42g00007 ATGACTACTTGTGTGGAGGATGAGGTCAAGAGAACACTGATACAGTTCCTGGAACAACTCTCTGGTAATAATAATGGCCAACAGAATTCCTTTTTGGATTGGAAATCAGACTCTGATCCCTGCACAGACCACTGGCAAGGTGTATACTGTGATGCTCAAAATATGTCTATAAAGAGGTTGAATCTTGACCGGTTCAATTTTTCTGGAACTCTTGATGTTGCTATGCTTTGTAACTTGCAGCCCCTAGCTGCATCTCTCACCTTTCTCAGTCTTGATGGCAACAATATTAGTGGAGGGATAACAGCTGAGATTGGAAACTGCAAACAACTCACTCGCCTGCATGTAAGTGGAAACCAACTTGCTGGAGACCTTCCTAGTTCACTCACCATGTTAAATAATTTGAAAATGCTAGACATTTCCAACAATAAGTTTTCAGGACCCTTGCCAGACTTGTCCAGAGTTTCAGGGCTGAATATGTTCCTTGCACAAAACAATAACCTCAGTGGAGATATACCCCCATTTCATTTCTCCAATTTTGACAAATTCAATGTCTCCTTCAACAATTTCAGTGGCCTCATTCCAGATGTGCATGGCTATTTCTTTGAAGACAGCTTCCTTGGTAATCCTGAACTCTGTGGAGATCCATTACCAAAAAATTGTTCTGGTCTTCCTCTGTCTGTTAGTGACACATCAGAAGGATCAAAGGGTCCTTCTGAAGAACAGATTCTTATGTATTCAGGCTATGCTGCATTAGGTGTTGTCCTTATCCTATTTGTTGTCTTAAGACTGTGTAGAAGAAAGAAGAAGGGAAAGAAAATAGAAGCATTGAATGGGGTAGTGGCAACTGATGGTGGGATTGAAAAGGCCAGCAATGTTTCCAGTGAATACAAAGCAGAGGTAAGTAGGTCTGAGTTTTCAATCAACTCTGAAAGTGGGATGGTTTCACAATCACTTATAGTTCTTTCAAGGCCAGTGGTCAATGAATTGAAATTGGAGGACTTGCTGAGGGCCCCTGCTGAATTGATTGGCAGAGGAAAGAATGGAAGTCTTTATAAGGTGATGCTTGCCAATGGGGTAATGGTGGTTGTGAAAAGGATCAAGGATTGGACAATTTCCAGCCATGACTTCAAGCAAAGAATGCAGATGCTGAGTCAAGCAAAGCACCCTCATGTACTGTCACCTCTTGCTTTCTATTGTTCCAAACAAGAGAAGCTTTTGGTCTATGAATATCAGCAGAATGGAAGTTTATTCAAGCTTCTACATGGAACTTCAAAAACCTTTGACTGGACCAGCAGACTTGGATATGCAGCTATGATTGCTGAGGCACTAGCTTTCATGCATCAAGAGCTTGGCCAACATGGTATTGTTCATGGTAATCTGAAATCCTCCAACATTTTGCTAAACAACAACATGGAGCCATGTATAAGTGAGTATGGTGTTATGTGTATGGATGATGAACAAAGTTTATCTTTTGCCAGTCCAATTGGTGGCTTCAAGGGAGATGTTTATGGCTTTGGTGTTATTCTTCTTGAACTGCTTACTGGAAAGTTAGTGAAGAGTAATGGGATTGATTTGACTGATTGGGTTCAGTCAGTTGTGAGAGAAGAATGGACAGGGGAAGTCTTTGACAGGTCCTTATTTTCAGAGTATGCAAGTGAAGAGAGGATGGTCAATTTGCTTCAGGTGGCTATTAGATGTGTCAATCGTTCCCCAGGGGCTAGACCAACTATCAACCAAGTTGCTCTTATGATTAACACTATAAAAGAGGAAGAAGAAAAGTCCTTGATTTACGAAGTTTGA 1800 0.4111 MTTCVEDEVKRTLIQFLEQLSGNNNGQQNSFLDWKSDSDPCTDHWQGVYCDAQNMSIKRLNLDRFNFSGTLDVAMLCNLQPLAASLTFLSLDGNNISGGITAEIGNCKQLTRLHVSGNQLAGDLPSSLTMLNNLKMLDISNNKFSGPLPDLSRVSGLNMFLAQNNNLSGDIPPFHFSNFDKFNVSFNNFSGLIPDVHGYFFEDSFLGNPELCGDPLPKNCSGLPLSVSDTSEGSKGPSEEQILMYSGYAALGVVLILFVVLRLCRRKKKGKKIEALNGVVATDGGIEKASNVSSEYKAEVSRSEFSINSESGMVSQSLIVLSRPVVNELKLEDLLRAPAELIGRGKNGSLYKVMLANGVMVVVKRIKDWTISSHDFKQRMQMLSQAKHPHVLSPLAFYCSKQEKLLVYEYQQNGSLFKLLHGTSKTFDWTSRLGYAAMIAEALAFMHQELGQHGIVHGNLKSSNILLNNNMEPCISEYGVMCMDDEQSLSFASPIGGFKGDVYGFGVILLELLTGKLVKSNGIDLTDWVQSVVREEWTGEVFDRSLFSEYASEERMVNLLQVAIRCVNRSPGARPTINQVALMINTIKEEEEKSLIYEV 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi42g00007 599 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Sebi42g00007 599 PANTHER OS05G0588300 PROTEIN 9 589 - -
Sebi42g00007 599 Gene3D Phosphorylase Kinase; domain 1 305 410 - -
Sebi42g00007 599 Gene3D Transferase(Phosphotransferase) domain 1 412 598 - -
Sebi42g00007 599 Pfam Leucine rich repeat N-terminal domain 11 51 IPR013210 -
Sebi42g00007 599 SUPERFAMILY Protein kinase-like (PK-like) 339 583 IPR011009 -
Sebi42g00007 599 SUPERFAMILY L domain-like 30 195 - -
Sebi42g00007 599 Pfam Protein kinase domain 340 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi42g00007 599 FunFam Nuclear pore complex protein NUP107 6 173 - -
Sebi42g00007 599 Gene3D Ribonuclease Inhibitor 81 224 IPR032675 -
Sebi42g00007 599 Gene3D Ribonuclease Inhibitor 3 80 IPR032675 -
Sebi42g00007 599 ProSiteProfiles Protein kinase domain profile. 336 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi42g00007 Sebi-Chr42 198880 201082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi42g00007 12 588 Receptor kinase-like Gene Family AT1G68400 34.385 6.98e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi42g00007 Pkinase 1.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi42g00007 - - gmx:100813796 915.99