Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi429g00016 ATGGGTTGGCTTAGCAGAATTTTTAAAGGCACAGACCATAAGGTTTCAGAAGGGCATTACTATAAAGAGGAAGCAGATTATTATTTGCCATCAACTTCAGGGATGTTTGGACCCAGAACGAGAATGAAGATTGATCGTGCTATTGCACTGTCTCTGGTAGAAGAAAATCAGAAAGTGAACAATGTAAATGACTACAGATCACAATTAGAAGAAGATGAACTACTTGCCAGAGCTATAGAAGAAAGCCTAAACTTGGAGTCTCCTCCCAGATATGGAAATGATAATAATATGTATCAACCAATTCGTATTTCCCGATGGGGTACAGGTATGAGTTTGAGGATGGATGATACCATTTTCTTACCCCAGCATATGCTGCCACTGCCTGATTGTTTGGATTCTGGATTTCTCTACTTTGACAATGTTATACCCCTTAGTTGGATTTGTGCTGGCTGCAATACTGAGATTGGCTATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGAAATTACCCTTACCATAAATCATGCTATAAGGAAGCTACCATCCAAAGTGTGATGTCTGCAGGCACTTTAGGACACTTCCTCTGCAGTAGCTTAGCTCTGGGGATTGATGTGTACAGGTTTACTAAACTCCAAATTGCAAACCTTGCATCCATCTTTCAGAATCAAATAAAGCCTTCTTTCTTTTCCAAACAAATTCCAACAAACCATGCTGGCCTTATTGAATATCGGGCACATCCATTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGATAATACTCCTCGCTGTTGCAGCTGTGAACGAATGGAGCCACAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGCCTGGATTCTGCCATCATGGATACTAGTGAATGCCAACCCCTTTATGCTGATATACAAAAGTTTTATGAAAGCCTAAATATGAGACTGGATCAGCAAATTCCACTACTGTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGAGAAGAATGGTCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTATTTCAAGACGACCTAGACATGGGACAGGAAATAGAGCACTAGACACAAGAACACAGCCATACAAACTGACTTCACGCTGTGATGTGACAGCAATTCTCATTTTATATGGTCTTCCAAGATTGCTTACTGGATCAATTCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTGAAAGGTTTTCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGCCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTTCTTCTGCGTCAGGCAGCAACTTTGTATCAACCTCATCCTCATCTGCATCATATGCAGCGAGAAAAGGTAAAAGACCTGATTTTGAGAGGAAGCTTGGAGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGATTTAGGGCAGGTTATAGAGCAGTGCGTAAATATGGGCTACAAAGGACCCTTCATCATATCAGGATGACGGGGAGTTTTCCATATGAATTATAG 1656 0.4233 MGWLSRIFKGTDHKVSEGHYYKEEADYYLPSTSGMFGPRTRMKIDRAIALSLVEENQKVNNVNDYRSQLEEDELLARAIEESLNLESPPRYGNDNNMYQPIRISRWGTGMSLRMDDTIFLPQHMLPLPDCLDSGFLYFDNVIPLSWICAGCNTEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKEATIQSVMSAGTLGHFLCSSLALGIDVYRFTKLQIANLASIFQNQIKPSFFSKQIPTNHAGLIEYRAHPFWIQKYCPSHEHDNTPRCCSCERMEPQEAGYIALKDGRKLCLECLDSAIMDTSECQPLYADIQKFYESLNMRLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRHGTGNRALDTRTQPYKLTSRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGFRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSTSSSSASYAARKGKRPDFERKLGEFFKHQIESDISPVYGDGFRAGYRAVRKYGLQRTLHHIRMTGSFPYEL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi429g00016 551 Pfam LIM domain 148 202 IPR001781 -
Sebi429g00016 551 CDD LIM_DA1 148 200 - -
Sebi429g00016 551 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 70 89 IPR003903 -
Sebi429g00016 551 SMART lim_4 147 199 IPR001781 -
Sebi429g00016 551 ProSitePatterns LIM zinc-binding domain signature. 148 182 IPR001781 -
Sebi429g00016 551 Gene3D Cysteine Rich Protein 143 208 - -
Sebi429g00016 551 PANTHER PROTEIN DA1-RELATED 2 248 549 IPR045218 -
Sebi429g00016 551 ProSiteProfiles LIM domain profile. 146 206 IPR001781 -
Sebi429g00016 551 Pfam Protein DA1 339 544 IPR022087 -
Sebi429g00016 551 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 146 173 - -
Sebi429g00016 551 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi429g00016 Sebi-Chr429 429893 435233 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi429g00016 DA1-like 1.4e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi429g00016 - - gmx:100783253 751.895