Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi428g00045 ATGGCTGAGCCAGAGCCACAAGGTGGTGGTGATCATGCCAATTCAGGATCCAGACGTGGTAAAGGCCCTGCTTCAAAGCGTGCCACCATGTCAACACCAAACCAAGAGGCATCAACAGCACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAATGCGGTATTGGATGCATATTTGCACCCCACTTTGGTTCAGACCAGGGTTCAGCCAGGTTTGCAGCTGTGCACAAAGTGTTTGGTGCTAGCAATGTGTCAAAGATGTTGTCCAGTATTCCAGAGGAACACCGAAATGAAGCGGTGTCCACATTATCCTATGAGGCTCAAGCAAGGATATCTGATCCGGTTTATGGTTGTGTCTCCACAATCCTTGCTTTACAACAACAGGTGGCAACATTGCAAGCAGAGGTGGGTATGATGCAAACCCAGGTGATGATGAATACTAATAGGTTGGCATGTGCAAGTGCTCTTCAGAGTTCACAACAGCAAATACTACAGCCAGCGTACTCCAACAACAATTCATCTGCTTCTACTGCAAATTTTATGAACTTGAACACCTTCAATAACCCTGCTGCTGGTGGTGCTAGTGTTGGTGGTTTTGATCTTACAATGGGGACAACACCCTCATCACACAGCTTAGAGCCTCTTCGACTCTCTAGCTTGTCCCAATATGATCATGAGGAAGAAGATGAACAAGAAAGCACCATTCCAAGCCTCTTCAACCGTCGTCAGTGA 729 0.4719 MAEPEPQGGGDHANSGSRRGKGPASKRATMSTPNQEASTAPCGACKFLRRKCGIGCIFAPHFGSDQGSARFAAVHKVFGASNVSKMLSSIPEEHRNEAVSTLSYEAQARISDPVYGCVSTILALQQQVATLQAEVGMMQTQVMMNTNRLACASALQSSQQQILQPAYSNNNSSASTANFMNLNTFNNPAAGGASVGGFDLTMGTTPSSHSLEPLRLSSLSQYDHEEEDEQESTIPSLFNRRQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi428g00045 242 Pfam Lateral organ boundaries (LOB) domain 41 139 IPR004883 -
Sebi428g00045 242 MobiDBLite consensus disorder prediction 218 242 - -
Sebi428g00045 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 38 182 - -
Sebi428g00045 242 ProSiteProfiles LOB domain profile. 40 142 IPR004883 -
Sebi428g00045 242 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi428g00045 Sebi-Chr428 800482 801329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi428g00045 12 232 AS2 family AT3G03760 49.796 6.79e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi428g00045 LOB 9.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi428g00045 - - aprc:113866578 256.529