Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi428g00043 ATGGCCGAAGAACGTAATAATACCAGAAAGTGTTGCAACCCGAACGAGGCTCGTCTGCTTCAATGCGCAGACCTGATCCTACCATGGCTAACTCCACCAGACCTCGCCAACCTCTCCATCACTTGCAAATCCCTGTGCCAACTCTCCCACTCCATCACTCTCCGCCGCTCCTCCGACGCTTCTAGAACCTTCGAGAATTTTCCAGTCCCCTTTCTCAACACCCTCGACCCCCACCCTTACGCCTACTTCCTCTACACCCCTTCCATCCTTCTCCCCTCCTCCCACCTCCCTCGCCAACCCTGGGGAGGCCCTTCCGTAATTTCCCCTTCCCCGCCGAGTCACCTTCGTCACGCGGAATCGGTGAGTCTGGTGGACGAGTTAGGTCACGCCGTGTCGGGATGCGACTGCAACGAGGCCTGTGGGGATGCGAGTTTGGGGTGTCCTTGTCTAGGTTTTGATGGGTTGGATGACGTGGACAGGGAGTGCGGACCGGGTTGCCGGTGTGGACCGGAGTGTGGAAACCGGTCGAGCCAGAAAGGGGTTGCGGTTCGGGTGAAGATTGTGAGGGATAGGAGGAAAGGGTGGGGTTTGTGTGCTGACCAGTTCATTCCCAAAGGGCAATTTGTGTTTGAGTATGCAGGTGAACTCTTGACAACCAAGGAAGCACAGAGGAGACAACTATGTTATGATGAACTAGCATTGCATGGTCGATTCTCTTCTGCACTTTTAGTTGTGAGGGAGCATCTTCCGTCTGGAAAGGCATGCTTGAGATTGAACATTGATGCCACAAGAATAGGAAATGTTGCGCGGTTTGTAAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTATGCTTCTTTGCTTTAAAAGATATCCAAGAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAATGGATTGCCATGCTATTGCAATAGCCCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTGA 1029 0.5141 MAEERNNTRKCCNPNEARLLQCADLILPWLTPPDLANLSITCKSLCQLSHSITLRRSSDASRTFENFPVPFLNTLDPHPYAYFLYTPSILLPSSHLPRQPWGGPSVISPSPPSHLRHAESVSLVDELGHAVSGCDCNEACGDASLGCPCLGFDGLDDVDRECGPGCRCGPECGNRSSQKGVAVRVKIVRDRRKGWGLCADQFIPKGQFVFEYAGELLTTKEAQRRQLCYDELALHGRFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFFALKDIQEDEELTFSYGEIRKRPNGLPCYCNSPSCFGTLPSEDT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi428g00043 342 ProSiteProfiles SET domain profile. 183 315 IPR001214 GO:0005515
Sebi428g00043 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 56 331 - -
Sebi428g00043 342 Gene3D SET domain 53 337 IPR046341 -
Sebi428g00043 342 SUPERFAMILY SET domain 66 335 IPR046341 -
Sebi428g00043 342 Pfam SET domain 194 315 IPR001214 GO:0005515
Sebi428g00043 342 ProSiteProfiles Post-SET domain profile. 322 338 IPR003616 -
Sebi428g00043 342 SMART set_7 183 321 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi428g00043 Sebi-Chr428 790239 792531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi428g00043 161 337 C2H2 Transcription Factor Family AT2G23740 33.158 3.23e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi428g00043 SET 8.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi428g00043 K11433 - gmx:100786871 490.73