Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi428g00014 ATGGTGGTGGTGGAGGATATGGCATGGCCATGGATGTTGTCGAGAGGTGGTGTGGCGCCGCTCCGCATCGTCTTCTCAGCGCGCGACGTCCAGCAGGAAGCAATCACAGTTTCTGGGTTCTCCTCCGCGCAATGTCTAGCAGACAGTCGTGACAGCTTCTCCTCCGCGACGTCCAGTAGTCACAGGTATTCGTTCTGCTGCGCGTCGCCGCCTCGTCTCATCCGCGCAACGCATCACTGCTTCTCCATTCTTCCGCGCGCTGCCGCTCGTCTCCTCCGTGCGACGCAGTCACAACTTTTGCGAGATCTAGCGGGCACAGGCTGCAGCAGCGGCTTCTCCGCGTCGATTGTCCCTCCGGTCAGGTTCTCCGCGTCGATCGTCCCTCCGGGTTTCCTTGTTTCTGATTGGGGCTCGGAAATGGGAAGCAGAAAGGAAGAAGAGAAGAACGAGAAAATTATCAGGGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGTAATAGTTTGGGACCGCAATATGTATGCACAAACTTTTGGACCTTTATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCCGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGTGGTAACCAGCGTGCAAGGGAAATATATTTGAAAACTTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGCAATGTTGATAAAATAAGGGAGTTTATAAGGAATGTGTATGTGGATAGAAGATATGCTGGAGCAAAGTCTTCTGAAAAGCCTCCAAGAGATGCACAGAGCCCTATAATTCATGAAGATGAGATTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATCGGCGCTATGGAAAACAAGCAGCTGCTTTAACCAGGAAACCTGGTTCAGATAAAGCTCGTTATGAAGGGAAAATGTCCAGTATTATCTATAGTCCCGGTCGCTTCAGCGATCATGCATATGATGACAGATTTGCAAATGAGGGATCTTCTGGTCCTAGAATTTCTGACTTTTCTGTGTCTAGTGGTTGTGAGCAATTCAAATCAGATGCTCAATCTCCTAAGTCTAATAAGGAGATTGGGTTTAGCAGTCCATCCTATCAGCATTCTGGTTCCAGCTCAAGTGAAGATGTATGGTCTCAAGCAAGAAATGCATCTCTAGAAACTAATGCCAGTTCCAAGAGAGATGCAGATGGAATTCATCGTCTGCAGAGAACTACATCATTGCAACCGGCAGACAGCAGCTCTTCATCCTTAGGATCTTACAATTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCTATCCAATCTTCAGGATCCCTTCAGAATAAAGCATCAGGAATTCCACCACCATCTGGTCCTACCAGAACTGTTAGCTTGGACCTTTCCAAGGCACCACCGGCATCAGCTTCATCTGTTGATCTTTTTCAATTACCAGCAGCACCATCTCAAGCTCCATTGATGGATCTGTTTCAATTATCTGATATGTCAGCAGCTCCATCTTTCAATGGGAATCAACTCACACAAACATCCCAACTCACATCTATTGACTTATTTGCGGATCTACCTCAGCAGCCTTCTACTGCAACCTCAGATGAGAAATCATTGGAGTTATCTGTCCCTAAAAATGAAGGGTGGGCAACGTTTGATACGCCTCAGTGCGCATCATCTACTGCACAGCTGGAAATTCCAGCTGTGGTACCTTCAAGTGCTGAACCTTTGCAGGATAGATTTGATCCATTTTCAACCGTAAATGCAAATATGCAATGGCCATCTTTTGAAATTTCTAGTGCCGGTGTACCTTCTGTTACATCTAATATATGGCATGATGGTGTGTGGAATGGAGGAGAACAAGTTTCTGCAATGGCAACAAACACTGAACCATGGAATGCATTTGAAGATTCTGGTAACCATCTTCCTGTGGATACCGTTAGTCAAGGATTACAGTTGCCCAATTTTCCATCAGCTGATGATCATAGTTTGGGTTTACGAGCTTCTGAGAACCAGGGACCCAATAAAGATGGAATGCAAGGAATTGCCCCTATTGGTGGATTTGATAATCAAGACATCCCATCGCATGGTGATATTCAACCTAATGGAATCAATTGTAAATCAACTAATCCATTTGATTTTCCCTATGATTCTGATGTAGATCACAGCAGTATGTTCCTTGATATGAGCACTTTGCAAGCTGCTCTGCCAGATGCCCTGTTGCCAGCCACCTTTCATGGTGGTATAGCTGAACCCTGGCTCCCTCAAAGTACAGTGACCCCATATATTTCCTCTGCAGAAGGTGGTTTGTCATTCATGGCTGTGCAAACACCAAGTACTCAATTACAGAACATCCAGACACAGGAACCAGTTGCTTCAATTGGGGGAAATCCTTTTGCATAG 2463 0.4555 MVVVEDMAWPWMLSRGGVAPLRIVFSARDVQQEAITVSGFSSAQCLADSRDSFSSATSSSHRYSFCCASPPRLIRATHHCFSILPRAAARLLRATQSQLLRDLAGTGCSSGFSASIVPPVRFSASIVPPGFLVSDWGSEMGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLKTWDFQRQRLPDSSNVDKIREFIRNVYVDRRYAGAKSSEKPPRDAQSPIIHEDEIRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKARYEGKMSSIIYSPGRFSDHAYDDRFANEGSSGPRISDFSVSSGCEQFKSDAQSPKSNKEIGFSSPSYQHSGSSSSEDVWSQARNASLETNASSKRDADGIHRLQRTTSLQPADSSSSSLGSYNSGGLVDFFSEPIQSSGSLQNKASGIPPPSGPTRTVSLDLSKAPPASASSVDLFQLPAAPSQAPLMDLFQLSDMSAAPSFNGNQLTQTSQLTSIDLFADLPQQPSTATSDEKSLELSVPKNEGWATFDTPQCASSTAQLEIPAVVPSSAEPLQDRFDPFSTVNANMQWPSFEISSAGVPSVTSNIWHDGVWNGGEQVSAMATNTEPWNAFEDSGNHLPVDTVSQGLQLPNFPSADDHSLGLRASENQGPNKDGMQGIAPIGGFDNQDIPSHGDIQPNGINCKSTNPFDFPYDSDVDHSSMFLDMSTLQAALPDALLPATFHGGIAEPWLPQSTVTPYISSAEGGLSFMAVQTPSTQLQNIQTQEPVASIGGNPFA 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi428g00014 820 CDD ArfGap_AGFG 150 260 - -
Sebi428g00014 820 FunFam Arf-GAP domain and FG repeat-containing protein 1 139 273 - -
Sebi428g00014 820 MobiDBLite consensus disorder prediction 345 421 - -
Sebi428g00014 820 SUPERFAMILY ArfGap/RecO-like zinc finger 149 261 IPR037278 -
Sebi428g00014 820 ProSiteProfiles ARF GTPase-activating proteins domain profile. 150 268 IPR001164 GO:0005096
Sebi428g00014 820 PANTHER ARFGAP/RECO-RELATED 140 820 IPR044820 GO:0005096
Sebi428g00014 820 MobiDBLite consensus disorder prediction 273 287 - -
Sebi428g00014 820 MobiDBLite consensus disorder prediction 461 488 - -
Sebi428g00014 820 MobiDBLite consensus disorder prediction 261 300 - -
Sebi428g00014 820 Pfam Putative GTPase activating protein for Arf 151 261 IPR001164 GO:0005096
Sebi428g00014 820 PRINTS HIV Rev interacting protein signature 181 198 IPR001164 GO:0005096
Sebi428g00014 820 PRINTS HIV Rev interacting protein signature 199 220 IPR001164 GO:0005096
Sebi428g00014 820 PRINTS HIV Rev interacting protein signature 162 181 IPR001164 GO:0005096
Sebi428g00014 820 SMART arf_gap_3 150 268 IPR001164 GO:0005096
Sebi428g00014 820 Gene3D Arf GTPase activating protein 139 271 IPR038508 -
Sebi428g00014 820 MobiDBLite consensus disorder prediction 355 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi428g00014 Sebi-Chr428 200936 215328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi428g00014 153 255 C2H2 Transcription Factor Family AT4G05330 35.088 5.51e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi428g00014 K15044 - gmx:100788316 1023.08