Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00080 ATGCTAAACCCCCTCCGCACTGCAAATATTTGGAGGCAAATCGAGTTGACGAAGCTGGAGATTCAGAAAGAGCAAGCAGACCAAAGGGTCAATTTCAGCGGAGACCCAACGAACCCTCATCCCCATGGCTATGACCCCAACCACATCGATTCTGCCCCTCGCCCTCCCCGTAAACGACCCTGGCATCACTCCAACCAAGGAACTTCTCCAGATCAAGTGGATGGTGGGGGTCATGTAAAAGTTTATGTTGCACCAGTTCCGAGAACTGCAACAGAGGCTGATATCCGCCCTGTTTTCGAAGGACATGGAACCATTGTTGAGGTTGTTCTTTTAAAGGATAAGAGAACTGGTGCTCGACAAGGAAGTTGTTTTGTGAAATATTCAACATTAAATGAAGCTGACAGGGCTATTAAGGCTTTAAACAATCAGTATACATTTCCTGGGGAATCATGTCCTGTTGTTGTCAGATTTGCTGATCGAGAACGTGAACGACTTGAGGTGGTGGATAAAGTTTTTGTTAGTTTCATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATGTCTTCATTGCGCACAGTCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGACATGGCGCTGGCAGCAATCAATGGGCTGAATAAAACGTTCACGATGAGAGGTTGTGATCATCCATTAGTTGTTCGATTTGCTGATCCTAAGAAACCTAAAACAGGAGAATCAAGGGGAAACTACTTATCTGGGAATGCAAATTTAGGTCCCTGTTCTCAAGAACCACCAGTTTGGCCAGTGCCAAATTTTTGTGATTCCAATACTAAGTTGAGTATTCCGCATATTGCCCCACATCACTCCACAATTGCACACCTGCAAGTTCCGCCTCATATGCCAAACTGGGAAACTGGTGCTACTGTAGTACCACAGCCATTTCTTCCCCAACAAGCACATTCACAATTGGCTTCAATGCCTTTGCGGTCAACTCAAGCTCCGAATTTGTCTTCTCAACCATTTATTAATGAGGTGCAGAGACAATCTCATCCAGCAGATTCATCAGTTCAAAATGTAGAGCAGCAGCTAAGTTCTCAGCTGCCTGCTCAAACTGGAAGCAATCCTAATATAGTTGCTGGCAGTACCTCACCTGATCTGCCTACAAGTCCCCTAGATGAAGATCCTCCAGAGTGTGACTGGAGTGAACACTACTGTCCTGATGGTCATAAGTACTACTACAACTGTGTCACTTGTGAAAGCAAATGGGAGAAGCCTGAGGAGTATGCCTTGTATGAGAAAGAATCACAGAAGCAGCAGGAGCACGAGGATCATAGCTGTCTTCATTCACAATCGCCAGTATCTTGCTCGCAAGAAGTTGCTCAAAGACAACAGGAAACAAATCATGATTACAGCCGGTCAGAAACAAGTCCTGTTGTTGGACAGGTGTGA 1467 0.4438 MLNPLRTANIWRQIELTKLEIQKEQADQRVNFSGDPTNPHPHGYDPNHIDSAPRPPRKRPWHHSNQGTSPDQVDGGGHVKVYVAPVPRTATEADIRPVFEGHGTIVEVVLLKDKRTGARQGSCFVKYSTLNEADRAIKALNNQYTFPGESCPVVVRFADRERERLEVVDKVFVSFINKEASKKEIEEIFSPYGHVEDVFIAHSRGYAFVKFSNRDMALAAINGLNKTFTMRGCDHPLVVRFADPKKPKTGESRGNYLSGNANLGPCSQEPPVWPVPNFCDSNTKLSIPHIAPHHSTIAHLQVPPHMPNWETGATVVPQPFLPQQAHSQLASMPLRSTQAPNLSSQPFINEVQRQSHPADSSVQNVEQQLSSQLPAQTGSNPNIVAGSTSPDLPTSPLDEDPPECDWSEHYCPDGHKYYYNCVTCESKWEKPEEYALYEKESQKQQEHEDHSCLHSQSPVSCSQEVAQRQQETNHDYSRSETSPVVGQV 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00080 488 CDD WW 404 433 IPR001202 GO:0005515
Sebi427g00080 488 MobiDBLite consensus disorder prediction 438 488 - -
Sebi427g00080 488 SUPERFAMILY RNA-binding domain, RBD 170 253 IPR035979 GO:0003676
Sebi427g00080 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 160 IPR000504 GO:0003723
Sebi427g00080 488 ProSiteProfiles WW/rsp5/WWP domain profile. 400 433 IPR001202 GO:0005515
Sebi427g00080 488 PANTHER RNA BINDING PROTEIN 46 443 - -
Sebi427g00080 488 MobiDBLite consensus disorder prediction 438 453 - -
Sebi427g00080 488 SMART rrm1_1 170 240 IPR000504 GO:0003723
Sebi427g00080 488 SMART rrm1_1 80 156 IPR000504 GO:0003723
Sebi427g00080 488 MobiDBLite consensus disorder prediction 30 78 - -
Sebi427g00080 488 Gene3D - 391 452 - -
Sebi427g00080 488 Gene3D - 168 252 IPR012677 -
Sebi427g00080 488 MobiDBLite consensus disorder prediction 353 394 - -
Sebi427g00080 488 MobiDBLite consensus disorder prediction 454 488 - -
Sebi427g00080 488 SUPERFAMILY RNA-binding domain, RBD 55 164 IPR035979 GO:0003676
Sebi427g00080 488 MobiDBLite consensus disorder prediction 353 401 - -
Sebi427g00080 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 148 IPR000504 GO:0003723
Sebi427g00080 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 229 IPR000504 GO:0003723
Sebi427g00080 488 SMART ww_5 401 433 IPR001202 GO:0005515
Sebi427g00080 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 244 IPR000504 GO:0003723
Sebi427g00080 488 Pfam WW domain 404 431 IPR001202 GO:0005515
Sebi427g00080 488 SUPERFAMILY WW domain 405 437 IPR036020 GO:0005515
Sebi427g00080 488 Gene3D - 72 167 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00080 Sebi-Chr427 893755 905503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00080 77 228 Eukaryotic Initiation Factors Gene Family AT1G49760 25.610 4.29e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00080 K13207 - gmx:100795107 682.945