Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00075 ATGTCATTGAAAAGCATAGTTCGTGAACTTAAGGAGATGAGAGATGGAATAGGTAGCATATCAAAGCGAGGTGTAGAAAGCAGGCATTGGCTGGGTAGGACAAAGTCACACGTTGCTCCTGATGTCCTTGTAACTCCATTTGAACCTATTCAACAGGGACAATGGGCAAATTTACCACCAGAATTGCTTTTGGACATAATTCGGAGGGTTGAAGAGAGTGAGACTTCTTGGCCTGCGAGGGCTGTTGTTGTTTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTGCAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACTTTTCCTCTTTCGTTGAAGCAGCCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATATATTGTACTTCGGTCTAGTGCCATCAGAGAATGAGAGTAATAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGGGCAACAGGCACCAACTTTATCATATCCTTGGCTGCAAATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGCAAGTTTTGGTCTTCACTATACATGACAGTCAACCTCCACGTGATGCTACTATTCAACCAAATTGTCCATCGAGTAGGAGATTTAATTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAACTATCTTGTTGGCACCGTTTCCTATGAGCTGAATGTTCTCTGCACTAGAGGGCCTAGAAAAATGCACTGCATCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGAGGCAATGCCCCTACTTCAACATCTTCCCCTCAGATATTCGATGAACCTTTTTCTCCCTCACCAGCACTAAAAGGAAAAGGTCCAACTACAGATTTAAACTCTGCAAGCCCACCAGAGCTACCAGTATTGAGCCAAGGCTCAGTTGAGCCTTTGGTACTAAAAAACAAGGCTCCCAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCGGAGCAAGAAATGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACTGTTATCCACTCTCTGCCTTTCAAGCCTTTGCCATATGCTTGAGCAGCTTTGATACTAAACCAGCCTGTGAATGA 1236 0.432 MSLKSIVRELKEMRDGIGSISKRGVESRHWLGRTKSHVAPDVLVTPFEPIQQGQWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSIAKEIVKTPEQCGRITFPLSLKQPGPRDSPIQCFIRRNRETSTYILYFGLVPSENESNKLLLAAKRIRRATGTNFIISLAANDFSRASNKYVGKLRQVLVFTIHDSQPPRDATIQPNCPSSRRFNSKQVSPRVPACNYLVGTVSYELNVLCTRGPRKMHCIMNSIPVSAIQEGGNAPTSTSSPQIFDEPFSPSPALKGKGPTTDLNSASPPELPVLSQGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEMVILQFGKIGKDIFTMDYCYPLSAFQAFAICLSSFDTKPACE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00075 411 PRINTS Tubby superfamily signature 321 338 IPR000007 -
Sebi427g00075 411 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Sebi427g00075 411 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Sebi427g00075 411 PRINTS Tubby superfamily signature 339 355 IPR000007 -
Sebi427g00075 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Sebi427g00075 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Sebi427g00075 411 Gene3D Tubby Protein; Chain A 113 411 IPR025659 -
Sebi427g00075 411 Pfam F-box domain 55 102 IPR001810 GO:0005515
Sebi427g00075 411 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Sebi427g00075 411 CDD F-box_AtTLP-like 55 99 - -
Sebi427g00075 411 PANTHER TUBBY-RELATED 49 409 - -
Sebi427g00075 411 Pfam Tub family 116 406 IPR000007 -
Sebi427g00075 411 MobiDBLite consensus disorder prediction 267 307 - -
Sebi427g00075 411 SUPERFAMILY Tubby C-terminal domain-like 104 411 IPR025659 -
Sebi427g00075 411 ProSitePatterns Tub family signature 1. 339 352 IPR018066 -
Sebi427g00075 411 MobiDBLite consensus disorder prediction 267 283 - -
Sebi427g00075 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Sebi427g00075 411 Gene3D - 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00075 Sebi-Chr427 844894 846869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00075 1 411 TUB Transcription Factor Family AT2G18280 63.373 5.52e-179 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi427g00075 Tub 1.3e-97 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00075 K19600 - gmx:100805380 727.628