Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00060 ATGGCATCAGGGGGTGTGGTACCTGCTTCTGGATTGACGGATATGAATGCAAGTTCTGTTGGCGTTGAAAGGTTGCCAGAGGAGATGAATGTAATGAAAATCAGGGATGACAAGGACATGGAAGCCACCGTGGTAGATGGAAATGGGACCGAAACAGGACATATAATTGTCACCACCATTGGTGGTAAAAATGGCCAGCCCAAACAGACAATAAGCTACATGGCCGAGCGTGTTGTTGGACATGGGTCTTTCGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCACCCTAATGTTGTATCTTTGAAGCATTGTTTCTTTTCAACAACCGAAAAAGATGAGCTTTATCTTAATCTGGTGCTTGAGTATGTTCCTGAGACCCTCAATCGTGTGATCAGACACTACAACAAAATGAATCAAAGAATGCCATTAATATATGTGAAACTTTATTCTTATCAGATTTGCAGAGCACTTGCTTATATTCACAACAGTATTGGAGTATGTCACAGGGATATAAAGCCTCAGAACTTACTGGTCAATCCTCACACCCACCAGCTGAAGATATGTGACTTTGGAAGTGCTAAAGTCTTGGTAAAAGGAGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCGGAGCTTATATTCGGTGCAACCGAGTACACCACAGCCATTGACATCTGGTCAGCTGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGCCGCTCTTTCCTGGCGAGAGTGGAGTGGACCAGCTTGTGGAAATTATCAAGGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACAGAGTTTAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGATCTTTCACAAGAGAATGCCACCTGAAGCCGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAACCTTCGAAGCACAGCTTTGGAGGCTCTGGCTCATCCATTCTTTGATGAGCTGCGTGATCCAAATACCCGGTTGCCAAATGGGCGTTTCCTTCCTCCACTATTTAACTTCAAAGCCAATGAGCTTAAGGGAGTACCTGCTGAGATGCTGGTGAAGCTGATTCCACCTCATGCAAGAAAGCAGTGTGCCTTATTTGGGTCATAA 1230 0.439 MASGGVVPASGLTDMNASSVGVERLPEEMNVMKIRDDKDMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETLNRVIRHYNKMNQRMPLIYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALAHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPAEMLVKLIPPHARKQCALFGS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00060 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 37 403 - -
Sebi427g00060 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Sebi427g00060 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi427g00060 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi427g00060 409 FunFam Shaggy-related protein kinase kappa 153 401 - -
Sebi427g00060 409 CDD STKc_GSK3 68 360 IPR039192 -
Sebi427g00060 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Sebi427g00060 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Sebi427g00060 409 FunFam Glycogen synthase kinase-3 beta 57 152 - -
Sebi427g00060 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Sebi427g00060 409 SUPERFAMILY Protein kinase-like (PK-like) 72 382 IPR011009 -
Sebi427g00060 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00060 Sebi-Chr427 658988 661784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00060 79 365 Core Cell Cycle Gene Families AT1G76540 34.237 7.52e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Sebi427g00060 Pkinase 3.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00060 K27413 - gmx:100788046 788.875