Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00056 ATGGACGACTGCTGTGCTGTTTGCGCCGAGCCATTGGAATGGGTTGCGTACGGACCCTGTTTGCACCGGGAGGTATGTTCCACCTGCGTCGCCCGCCTCCGTTTCATATGCGACGATCGCCGTTGCTGCATCTGCAAGACCGAGTGCAACCTCGTATTCGTTACCAAGGCTCTAGGGGATTATACAAGAATGATCAATGATTTTTCAGCCCTGCCAGTTGAGGTAAGGGAGGGCAAGGTTGGATCATACTGGTACCATGAGGATACAAACGCCTTTTTCGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAATGTATGTGACAAGATGGAGGAGCAACCACATGATGGTTCAAGGCGACGGCCGAGGTTTAGGAATATAGGACAGCTGAAGGGTCACTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTATGTCTGGAGGGAAGGAAGGTATTTATATGTGAGCAAAAACTATACACTAGAGCACAGCTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAATGAACTATACACGCATATGTCTACAGAGCATTATACATGTCACATTTGCCAAAGGCAGCATCCAGGACAATATGAATACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTTTTATGCGAAGATGAGGCTTGTCTTGCCAAGAAATTTGTTGTGTTTCAATCTGAGTCAGAGATGAAGAGGCACAATGCTCTTGAACATGGAGGGCGAATGTCACGGTCAAAGCGCAACGCTGCTCTTCAGGCATATCCTTTTTACTCCCTTACAGAAGTTACAGTAGCTTTCATTCTTTCCTTACAGATACCGACTAGCTTCCGATACAGACATGGTAATGAGCAGGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATTTTTCTGAAAACCAACTTTCTATGGCCATTCAAGCCAGTTTGGAGATGGCTAATGCTGAGCAAACGTTTCATAATCCATCAACATCAAGTACAGCTGGTTCTGAGTCATCTTCAAGATACCTTCAAGCCTTAGGACATAGTTCTAAGAATGGACCTCTGGAAGATTCTTCCTTTCCTCCGCTTCCCATAGTTTCCGGCAATGGCCAGCAAAGGTCCAGACATGAGTTGGAAGGTTCATCTAGTAACACTATGGCAGCCCGTTTGCGCCGGCATGGCAACAGAAATGTATCTGTAATTAATTCTGGTATTGCCTGGTCTGTAGCGGGCCGTGGACCTGTACAATCATCAAGTAATTCTTCACAATCTAATATGTCTGCAAATCTTGCCCTTGGAGTGTCTCGTAATTTTGGTCAGATGAAGACAATTAACAATGGTCTTTCACAATCAACTTATGCTAGTTCTATTCAGGGTATGCATAGAACTGCTCATGGACAATTACCCGCTAGTTCATCGAGGGAAACACGCGACAGTGGTAGAATGGTTCACTCTGCATCTGCTCCAAACCTCATTGAGAGCAATCCTGTTGAAGTTTCAATTTCCGATTTTCCTCCAGTTTCTGCCACACAAGTGAGTAAGTTGCCTACAAGTAGCCAGTCTCTATTGAATGTGGAGAATGTTCAGTCTGCTAACAAGTCCTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGATAGATACTCTATATTTAAAGACATATCTGCTCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGAGTATGTGCAGCAGTTTGGTTTGTCACATCTTGTACTTGAGTTGGCAAGACTATGCCCGGATGTTCAGAAACAGAAAGAACTTGTCGAGTGCTACGCCAATTTGCAAAAAAATGCTTTACAGGAAAATAACTGGATTGGTGGTGGCACTAGCACTCATCGGAAGGCCAGTAATGCCAACAAGAAAGGTAAAGGGAAGGCTGTAGACGGAGGGAAGGCTGTAGACGGTATGGGGAGTAACTCCACAGAGAGATTAGCAGATAGCTTTTTAAACACTGTACATCGGCTACAGTCAAATTATAAATCTTCAGAAGAGAATTCGGAGGTACTATCAAAGGGTGATTACCGCACTGAGAAAGGCAAATTAAAATTTGAGCAGCAGACTGGTACAAACTCTGGTAGTCAACCTAAGATGAAGGAAACATCAAATGGCAGCTTATCTAATCAAAATAGAGAGGATGGGGGTGGTGGGAATAAGCAACGCAAAAAATCTTCCAAGTTCCTCAGAGTGCGACTCGGTGATGGTTCTGCTTCGGCCCTTCTAGATCTTGAAAACTCGCGCGCCGAATCAGATCCTGGAACAACAGACAGTTTAGAAGGTAACAAGAATGACTCTGGAGGAGGGCTGCCTGTACCTGTACGAGGTGTTTGGCGAAATGGGGGAGGCCAGAAACTCTTTCCCTGA 2508 0.4482 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLVFVTKALGDYTRMINDFSALPVEVREGKVGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCNVCDKMEEQPHDGSRRRPRFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSESEMKRHNALEHGGRMSRSKRNAALQAYPFYSLTEVTVAFILSLQIPTSFRYRHGNEQEQRRGRGRTFRRDFSENQLSMAIQASLEMANAEQTFHNPSTSSTAGSESSSRYLQALGHSSKNGPLEDSSFPPLPIVSGNGQQRSRHELEGSSSNTMAARLRRHGNRNVSVINSGIAWSVAGRGPVQSSSNSSQSNMSANLALGVSRNFGQMKTINNGLSQSTYASSIQGMHRTAHGQLPASSSRETRDSGRMVHSASAPNLIESNPVEVSISDFPPVSATQVSKLPTSSQSLLNVENVQSANKSLVEKIRGALDFDEDRYSIFKDISAQYRQGTIDTGTYVEYVQQFGLSHLVLELARLCPDVQKQKELVECYANLQKNALQENNWIGGGTSTHRKASNANKKGKGKAVDGGKAVDGMGSNSTERLADSFLNTVHRLQSNYKSSEENSEVLSKGDYRTEKGKLKFEQQTGTNSGSQPKMKETSNGSLSNQNREDGGGGNKQRKKSSKFLRVRLGDGSASALLDLENSRAESDPGTTDSLEGNKNDSGGGLPVPVRGVWRNGGGQKLFP 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00056 835 ProSiteProfiles Rhodanese domain profile. 417 453 IPR001763 -
Sebi427g00056 835 CDD RING-HC_ZNF598 3 54 IPR041888 -
Sebi427g00056 835 MobiDBLite consensus disorder prediction 401 420 - -
Sebi427g00056 835 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Sebi427g00056 835 SMART c2h2final6 220 250 IPR013087 -
Sebi427g00056 835 SMART c2h2final6 251 280 IPR013087 -
Sebi427g00056 835 SMART c2h2final6 196 219 IPR013087 -
Sebi427g00056 835 SMART c2h2final6 108 144 IPR013087 -
Sebi427g00056 835 MobiDBLite consensus disorder prediction 715 731 - -
Sebi427g00056 835 MobiDBLite consensus disorder prediction 707 835 - -
Sebi427g00056 835 PANTHER ZINC FINGER PROTEIN 598 1 740 IPR044288 GO:0061630|GO:0072344
Sebi427g00056 835 MobiDBLite consensus disorder prediction 384 420 - -
Sebi427g00056 835 MobiDBLite consensus disorder prediction 732 762 - -
Sebi427g00056 835 MobiDBLite consensus disorder prediction 796 810 - -
Sebi427g00056 835 MobiDBLite consensus disorder prediction 653 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00056 Sebi-Chr427 617944 621902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00056 1 830 C2H2 Transcription Factor Family AT3G62240 52.397 0.0 821