Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00044 ATGAGGCCTGAGAATGGCGAAGCGCATAAACATGATGAAACAACTACCAACACAGAGGGGGAAAAGAGCAAACAAAAAGAGAAAGTTGAAACGGTTCCATATTACAGGCTGTTCTCATTTGCAGATTCTGCTGACATCATGTTGATGATTTTAGGCACCATTGGTGCCATTGGAAATGGTTTGGGTATGCCTATCATGACGTTGCTGTTTGGACAAATGATTGATAGCTTTGGAAATAACCAGTTTGGCCCAGACGTTGTCAACCAAGTTTCCAAGGTCTCTCTGAAATTTGTATACCTGGGAATAGGCACTGGTGTGGCTTCATTCCTCCAGGTGGCTTGCTGGATGGTCACAGGGGAGAGACAAGCTGCAAGAATTAGGGGCATGTATTTGAAAACTATACTGAGACAAGAGATTGCTTTCTTTGATAAGGAAACTAACACTGGAGAGGTGATAGGGCGAATGTCAGGTGACACTGTGCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAATTTTTGCAGCTAGTAGCTACATTCATTGGGGGCTATGTGATAGCATTTATCAAAGGGTGGCTTCTTACTGTTGTCTTGTTGTCCAGTCTTCCACTTCTTGTTGCTGCTGGTGCTGCTATGGCTCTTATCATAGGAAAGATGGCATCCCGAGGGCAAAGCGCATATGCAAAAGCTTCACATGTAGTAGAACAGACAATTGGCTCAATAAGAACTGTTCAGTCCTTTACTGGGGAAAAGCAAGCAGTATCTAGTTACAGAAAATTTCTTGCAGATGCTTACAAATCAGGAGTTCATGAAGGTTTGGTATCCGGAATGGGTTTTGGCATGGTTATGTTAGTTATTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATAGAAAAAGGATATGATGGGGGTCAAGTGATCAATGTCATTGTTGCTGTGTTGAATGCTTCAATGTCTCTTGGCCAGACATCTCCTTCAATGAGTGCTTTTGCTGCGGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGAGATAGATGCTTATGACCCAAATGGAAAAGTACTAGAGGATATTCATGGTGAAATAGAATTAAGGGATGTTCATTTCAGTTATCCAGCCAGGCCTGAGGAGTTGATATTCAATGGATTCTCTCTTCACATACCAAGTGGCACCACTGCTGCTTTGGTAGGAGAAAGTGGAAGTGGCAAGTCTACAGTTATCAGTTTGATAGAAAGATTCTATGATCCACAAGCAGGTGAAGTTCTTATTGATAGCATTAATGTGAAAGAGTTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTAAGCCAGGAGCCAGCATTGTTTGCATCTAGCATTAAGGATAATATTGCATATGGAAAGGAGGGAGCAACAATTGAAGAGATAAGAACTGCCGCTGAACTTGCAAATGCTGCTAAATTTATTGATAAACTGCCACAGGGATTTGACACAATGGTTGGTGAGCATGGAACTCAACTATCTGGTGGACAGAAGCAACGTATTGCCATTGCAAGAGCAATCCTAAAAGATCCAAGAATTCTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGTATAGTGCAAGAAGCTCTAGACAGGGTCATGGTCAACAGAACTACTATTGTTGTTGCACATCGCCTAAGCACAGTGAGGAATGCTGACATGATTGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGGACACATGTAGAATTACTCAAGGATCCTGAGGGAGCTTACTCTCAACTTATACGTTTACAAGAAGTAAACAAGGAATCAGAAGAAAGTGCAGACAAACAAAACAAGAGTGAACTTTCCTCAGAATCATTTAGACGATTGAGTCAAAGAGGCTCACTCTCACTTAGAAGATCAGGATCATCTGTGGGGAATAGTAGCCGCCACTCATTTTCAATTTCATTTGGTTTACCCACAGGAGTTAACATCCCTGATACTGAACATGAAAATTCACAACCTGAAGAAAAATCACCAGAGGTTCCACTCCGACGCCTTGCTTCCCTTAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTATAGCTGCCATAGCAAATGGTACTATATTTCCAATATTTGGCGTTTTGCTTTCCAGTGTTATCAAAACATTTTATGAACCATTCCATGAGATGAGCAAGGATTCCAAGTTTTGGTCACTAATGTTTGTGACCCTTGGAATTGCATCTTTAGTGGCAATTCCAGCCCGAGGATACTTTTTCTCTGTGGCTGGCAGTAAGTTAATACAACGTATTAGGTTGATTTGTTTTGAGAAGGTGGTCAACATGGAAGTTGGTTGGTTTGATGAGCCTCTGCACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGTGATGCGCTGGGACTTTTGATTCAAAACATAGCAACAGCATTGACAGGTTTGATTATTGCTTTCATTGCAAGCTGGCAGTTGGCGTTTATTCTTCTTGTCTTGGTTCCTCTCATTGGAATGAATGCATATATTCAAATGAAATTCATGAAGGGATTCAGTGAAGATGCAAAGAAGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTGGGAAGCATAAGAACAGTGGCTTCTTTCTGTGCTGAAGAGAAAGTTATGGACTTGTACAGGAAGAAATGTGAAGGTCCTGTGAAAACAGGGATACGGCAAGGCTTGATCAGTGGAACAGGATATGGGATTTCATTTTTCTTGCTCTATAGTGTGTATGCAACCAATTTCTATGCTGGAGCAAGATTTGTGGACGCTCACAAGGCAACATTCTCAGATGTTTTCCGGGTTTTCTTTGCTTTAACAATGGCAGCTATTGGAATTTCCAACTCAAGCTCTCTAGCTCCTGATTCTAGCAAAGCCAAGACTGCCACTGCTTCCATATTTGAAATAATTGATAGGAAGTCAAAGATAGATCCTAGTGATGAATCTGGCAGCACACTGGATAGCACAAAGGGTGAAATAGAGCTTCATCATGTGAGCTTTAAGTATCCATCTAGGCCACATATACAAATTTTTCGAGACCTTAGCTTGACTATCCATTCTGGCAAGACCGTGGCTCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTAATTGCTTTGTTACAAAGATTTTATGACCCTGATTCTGGACAAATTACACTTGATGGCATAGAAATTCAGAGTTTACAGCTTAAGTGGTTAAGGCAACAGACAGGCCTTGTAAGCCAAGAGCCAGTTTTGTTCAATGACACTATCCGTGCCAATATTGCCTATGGAAAGGATGGCAAAGCAACTGAAGCAGAAATCATAAATGCAGCAGAACTGGCCAATGCACATAGGTTTATTAGTGGCTTACAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGGATCCAACTATCTGGTGGGCAGAAACAACGGGTAGCCATTGCACGTGCTATAATTAAAAGCCCAAAGATATTGCTACTAGATGAGGCCACAAGTGCATTAGACGCAGAGTCAGAGAGAGTTGTTCAAGATGCATTAGACAAAGTGATGGTGAACCGGACCACTGTGGTTGTGGCACATCGACTATCTACAATTAAAAATGCAGATGTGATTGCAGTGCTTAAAAACGGAGTTATAGTGGAGAAAGGAAGGCACGAGACACTCATTAACATTAAGGATGGATTTTATGCTTCCTTAGTCCAACTTCATGCAAGTGCTACAACTGTGTAA 3816 0.4188 MRPENGEAHKHDETTTNTEGEKSKQKEKVETVPYYRLFSFADSADIMLMILGTIGAIGNGLGMPIMTLLFGQMIDSFGNNQFGPDVVNQVSKVSLKFVYLGIGTGVASFLQVACWMVTGERQAARIRGMYLKTILRQEIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLVATFIGGYVIAFIKGWLLTVVLLSSLPLLVAAGAAMALIIGKMASRGQSAYAKASHVVEQTIGSIRTVQSFTGEKQAVSSYRKFLADAYKSGVHEGLVSGMGFGMVMLVIFCGYALAVWFGAKMIIEKGYDGGQVINVIVAVLNASMSLGQTSPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKVLEDIHGEIELRDVHFSYPARPEELIFNGFSLHIPSGTTAALVGESGSGKSTVISLIERFYDPQAGEVLIDSINVKEFQLRWIRGKIGLVSQEPALFASSIKDNIAYGKEGATIEEIRTAAELANAAKFIDKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESESIVQEALDRVMVNRTTIVVAHRLSTVRNADMIAVIHRGKMVEKGTHVELLKDPEGAYSQLIRLQEVNKESEESADKQNKSELSSESFRRLSQRGSLSLRRSGSSVGNSSRHSFSISFGLPTGVNIPDTEHENSQPEEKSPEVPLRRLASLNKPEIPVLLIGCIAAIANGTIFPIFGVLLSSVIKTFYEPFHEMSKDSKFWSLMFVTLGIASLVAIPARGYFFSVAGSKLIQRIRLICFEKVVNMEVGWFDEPLHSSGAIGARLSADAASVRALVGDALGLLIQNIATALTGLIIAFIASWQLAFILLVLVPLIGMNAYIQMKFMKGFSEDAKKMYEEASQVANDAVGSIRTVASFCAEEKVMDLYRKKCEGPVKTGIRQGLISGTGYGISFFLLYSVYATNFYAGARFVDAHKATFSDVFRVFFALTMAAIGISNSSSLAPDSSKAKTATASIFEIIDRKSKIDPSDESGSTLDSTKGEIELHHVSFKYPSRPHIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQSLQLKWLRQQTGLVSQEPVLFNDTIRANIAYGKDGKATEAEIINAAELANAHRFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVLKNGVIVEKGRHETLINIKDGFYASLVQLHASATTV 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00044 1271 Pfam ABC transporter transmembrane region 49 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi427g00044 1271 Pfam ABC transporter transmembrane region 704 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi427g00044 1271 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Sebi427g00044 1271 CDD ABC_MTABC3_MDL1_MDL2 1026 1264 - -
Sebi427g00044 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi427g00044 1271 SMART AAA_5 1053 1246 IPR003593 GO:0016887
Sebi427g00044 1271 SMART AAA_5 399 585 IPR003593 GO:0016887
Sebi427g00044 1271 FunFam ABC transporter B family member 1 362 611 - -
Sebi427g00044 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 610 IPR027417 -
Sebi427g00044 1271 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Sebi427g00044 1271 Gene3D - 370 627 IPR027417 -
Sebi427g00044 1271 Pfam ABC transporter 391 539 IPR003439 GO:0005524
Sebi427g00044 1271 Gene3D ABC transporter type 1, transmembrane domain 95 1000 IPR036640 GO:0005524|GO:0016020
Sebi427g00044 1271 FunFam ABC transporter B family member 1 1016 1266 - -
Sebi427g00044 1271 CDD ABC_MTABC3_MDL1_MDL2 372 610 - -
Sebi427g00044 1271 FunFam ABC transporter B family member 1 684 992 - -
Sebi427g00044 1271 SUPERFAMILY ABC transporter transmembrane region 36 356 IPR036640 GO:0005524|GO:0016020
Sebi427g00044 1271 MobiDBLite consensus disorder prediction 614 688 - -
Sebi427g00044 1271 Pfam ABC transporter 1045 1194 IPR003439 GO:0005524
Sebi427g00044 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1264 IPR027417 -
Sebi427g00044 1271 MobiDBLite consensus disorder prediction 614 629 - -
Sebi427g00044 1271 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 333 - -
Sebi427g00044 1271 MobiDBLite consensus disorder prediction 1 27 - -
Sebi427g00044 1271 MobiDBLite consensus disorder prediction 630 675 - -
Sebi427g00044 1271 PANTHER ABC TRANSPORTER B FAMILY 11 613 IPR039421 -
Sebi427g00044 1271 FunFam ABC transporter B family member 9 36 368 - -
Sebi427g00044 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Sebi427g00044 1271 FunFam ABC transporter B family member 9 993 1015 - -
Sebi427g00044 1271 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524|GO:0016887
Sebi427g00044 1271 Gene3D - 1016 1270 IPR027417 -
Sebi427g00044 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1263 IPR003439 GO:0005524
Sebi427g00044 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi427g00044 1271 SUPERFAMILY ABC transporter transmembrane region 686 1010 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00044 Sebi-Chr427 510116 515435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00044 25 1265 Calmodulin-binding Proteins AT2G36910 44.374 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00044 K05658 - gmx:100802547 2096.63