Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00037 ATGGGAAAAGCTCCTAGTTCTTCCTCTTCTTCTATTAGCAGTAGTAGCAACCACCAACTTGTTCTTTCAACTGCTTCCTCTCTCACACAGTTTAACACACAAGAACTTCCTACAGATCTTAGCCTTGGATTGAGCCTTTCAGCTACTCAACATGTTGGCTCTTCTATTTCAAGGGGACAATGGCAACCAAACCACCCAATTTTAAGTGGTTCACAAGCTATTGAAGTAAATGATTGCAATGATCATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGAATTCCAATTGGGAGAAAACTCAATATACTTGCTCATGATAGTTACCATGAGTTAGTAAAGACTCTTGAACACATGTTTGACACTACCATTCTATGGGGAACAGAGATGGATGGAGTGCAACCAGAGAGATGTCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTCTTGTCCACTGTAAAGAGGCTGAAGATCACCCGGGTAGACACATTTGGGTGTTAA 534 0.4157 MGKAPSSSSSSISSSSNHQLVLSTASSLTQFNTQELPTDLSLGLSLSATQHVGSSISRGQWQPNHPILSGSQAIEVNDCNDHSSFFVKVYMEGIPIGRKLNILAHDSYHELVKTLEHMFDTTILWGTEMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00037 177 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
Sebi427g00037 177 Gene3D - 78 176 - -
Sebi427g00037 177 SUPERFAMILY CAD & PB1 domains 80 169 - -
Sebi427g00037 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 172 IPR003311 GO:0005634|GO:0006355
Sebi427g00037 177 Pfam AUX/IAA family 78 171 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00037 Sebi-Chr427 426870 427661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00037 87 173 B3 DNA Binding Superfamily AT2G46530 36.364 9.52e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi427g00037 AUX_IAA 3.2e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00037 K14484 - gmx:100818376 272.322