Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00036 ATGAGTGAGAAGATGCTTGACTCTAGCCACTCAGGGATGACAAGAAACTCCTCTCATCTAGCTTCCATTTATGGCAAGGATTTAGTTGAGCTGGTATGGGAAAATGGTCAGATTCTTGTACAAGGAGGTTCATCAAATGGAACAGGAAAGGCTCCTATGTGCATAGGGTATTCAATAAACCCTTCACATAACATGGAAGCAATAGATGAAGATGCCAGCATTACAAAAAAAACAAGCTTAAGTACATCATCATACTCACTTTTGAATCACTTCCCAGCTCAAAAAAACTCTGACTTTACCTCTTCTCATCAAAGCAATGGCCAAGCTTCCTGTCAGATTGATTTGCAATCTTCCCAAAGCAAGAATTCCTTCAAGTCTAATGATGAATTCACAAACTTGAGACCAATAAAAACTCTAACCTCACTGAGGGACCTCATCATCAGCTCAATACTACAACAGCAAATAGTCATTTGTGCAAATATCCCTCACAACAGTCCTTACCAAGAATGGACTCAAACCAAACACCAACAACAAACTCAAAGAAACAGTACTTTGGATGTGATCAAAGATCAAGAAAGATCAACATATCAGGGAAACAGTGCAACTAGGCCAATAAGAAATCCATCTTCAGCAAGAGTGGAGGAGATTGAACCAAAAGCAGCAAATATTGCTTCAACTAGTGGCAAAGCTCCTGATTCAGCTAAAGGATCAACTGGTCTCACCACAGGATCTCAAGAAAGAACATCATTAATAACTGCTAATAAATCCAACCTGGCATCCCTTGCTGAAAGAAGTGCTGAACCACCCCTTGACCAACACTCTGAAGCTATTGGCCATAGCATTAATGCCCTTGGAACTCAAGGATCACATGGTCAATATTATAACCAAACCTCAAACTCAGCTGCAGTTAGAGCAAAAGGAAAAGCTAATGCTAACTTGTGTAATGAAAGAGTATCTTCTTCTGTATGCTCACTTGGAGCCTCAAATGACCCAAACTTGGGTATCAGGAAACATGAGGACACTGATGACTCAACATATTTTAGTGATAATGATGAAGAAGCAGAAGATATAGTAAAGGAAATGACAGCTACGGAGGGTAACAGAGTCAAGAGAAGCAGGAATGCAGAGATTCATAACTTATCTGAAAGGAAACGAAGAGATAAAATCAACAAGAAGATGCGCACATTAAAAGAGCTCATACCAAATTGCAATAAGGTGGACAAAGCATCAATGCTTGATGATGCCATCGACTATCTAAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGAAGTGGGCTTTGTATGCCACTGATGATGTTACCTCACATGAATGCACCACATTTAATGGGGGCTGCTGGAATGGGTTTCAGGCCAGGAACAGGAATCCCACCACAGTTCCCTATTCCACCATTGCCTGGTATCACAGATCATAACAGACTTCAGATGTTTGGTTTCTCTAACCCAATACCACCACCCATGCCAATTCCCATTCCCAATGCACCTTTTCTTCCTATCATTGGAAACACTACTTCTACACAACCATTCATGGCACCTGGCACAGTTACCAACCTGGCTAATCCTGCACAGTTAACAACAACTTTAGAGGTCTCAGATCTTTATGCAAAGGCTGAGGATGCAACAAAGCAAGCTTGGAATCAGGTTTCCCTTCACCAACATGGCACCAGCGCCTATCCCTGTCATTTTCCCACAAATAAAGAGGAAAATGGAAAGTGGAAAGGAAAGGAAAAACTAGAAGGAAAATGA 1770 0.4113 MSEKMLDSSHSGMTRNSSHLASIYGKDLVELVWENGQILVQGGSSNGTGKAPMCIGYSINPSHNMEAIDEDASITKKTSLSTSSYSLLNHFPAQKNSDFTSSHQSNGQASCQIDLQSSQSKNSFKSNDEFTNLRPIKTLTSLRDLIISSILQQQIVICANIPHNSPYQEWTQTKHQQQTQRNSTLDVIKDQERSTYQGNSATRPIRNPSSARVEEIEPKAANIASTSGKAPDSAKGSTGLTTGSQERTSLITANKSNLASLAERSAEPPLDQHSEAIGHSINALGTQGSHGQYYNQTSNSAAVRAKGKANANLCNERVSSSVCSLGASNDPNLGIRKHEDTDDSTYFSDNDEEAEDIVKEMTATEGNRVKRSRNAEIHNLSERKRRDKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLCMPLMMLPHMNAPHLMGAAGMGFRPGTGIPPQFPIPPLPGITDHNRLQMFGFSNPIPPPMPIPIPNAPFLPIIGNTTSTQPFMAPGTVTNLANPAQLTTTLEVSDLYAKAEDATKQAWNQVSLHQHGTSAYPCHFPTNKEENGKWKGKEKLEGK 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00036 589 MobiDBLite consensus disorder prediction 574 589 - -
Sebi427g00036 589 FunFam Basic helix-loop-helix transcription factor 368 431 - -
Sebi427g00036 589 MobiDBLite consensus disorder prediction 192 249 - -
Sebi427g00036 589 MobiDBLite consensus disorder prediction 192 207 - -
Sebi427g00036 589 Gene3D - 369 430 IPR036638 GO:0046983
Sebi427g00036 589 MobiDBLite consensus disorder prediction 564 589 - -
Sebi427g00036 589 MobiDBLite consensus disorder prediction 226 249 - -
Sebi427g00036 589 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 422 IPR011598 GO:0046983
Sebi427g00036 589 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 433 IPR036638 GO:0046983
Sebi427g00036 589 CDD bHLH_AtPIF_like 373 435 IPR047265 -
Sebi427g00036 589 PANTHER TRANSCRIPTION FACTOR PIF3 2 550 IPR044273 GO:0003700|GO:0006355
Sebi427g00036 589 SMART finulus 379 428 IPR011598 GO:0046983
Sebi427g00036 589 Pfam Helix-loop-helix DNA-binding domain 378 422 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00036 Sebi-Chr427 410447 412922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00036 283 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 44.615 2.99e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi427g00036 HLH 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00036 K12126 - gmx:100804665 395.586