Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00031 ATGGAAAAATTCATTCTCAGTGGTCTTATATTGTTAGTGAGGTTACTCACTTCAGAACTCAGAGTAGCATCCGCTGCAGGTTGGCTGCAAGCACATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACTATGGGGGGTGCATGTGGCTATGGAAATCTCTACACAGATGGTTATGGCATAAAAACTGCAGCTTTGAGTACAGCTTTGTTTAATGATGGCAAGTCATGCGGTGGTTGCTATGAAATAACTTGTGACGCAAAACAAGTGCCCCAATGGTGCCTTAAGGGCACTTCCATCACTATTACTGCCACAAATTTCTGTCCCCCAAACTTTGCTCTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCTGCTTTTGAGACAATAGCCAAATACAGAGCTGGAATTGTGCCAGTTTTATACAGAAAAGTTGAGTGCAAAAGAAGTGGGAACATCAGATTTACCATCAATGGGAGAGACTTTTTTGAACTAGTGCTGATAAGCAATGTAGGTGGTGCTGGAGAGATTTCACGTGTTTGGATCAAAGGGTCCAAAATGAAAAACTGGGAAACCATGTCAAGGAATTGGGGTGCTAACTGGCAGAGCTTAAGCTATCTCAATGGTCAGAGCTTATCTTTCAGAATTCAACTCAGCAATGGGAAGACTCTCACAGCTATTAACGTGGCACCATCCAATTGGAGATTTGGCCAGTCTTTCAAAAGAATTATATATTCCAAGTGGTTGTGGCTCAGCAATTTTAGTGAAGTCACCCACGGAACTTTGGTGTAA 819 0.4286 MEKFILSGLILLVRLLTSELRVASAAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYGIKTAALSTALFNDGKSCGGCYEITCDAKQVPQWCLKGTSITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFETIAKYRAGIVPVLYRKVECKRSGNIRFTINGRDFFELVLISNVGGAGEISRVWIKGSKMKNWETMSRNWGANWQSLSYLNGQSLSFRIQLSNGKTLTAINVAPSNWRFGQSFKRIIYSKWLWLSNFSEVTHGTLV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00031 272 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Sebi427g00031 272 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Sebi427g00031 272 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Sebi427g00031 272 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Sebi427g00031 272 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Sebi427g00031 272 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Sebi427g00031 272 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Sebi427g00031 272 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Sebi427g00031 272 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Sebi427g00031 272 Gene3D - 16 157 IPR036908 -
Sebi427g00031 272 SMART dpbb_1 63 151 IPR007112 -
Sebi427g00031 272 PANTHER EXPANSIN-A15 12 250 IPR002963 GO:0009664
Sebi427g00031 272 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Sebi427g00031 272 FunFam Expansin 161 253 - -
Sebi427g00031 272 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Sebi427g00031 272 SUPERFAMILY Barwin-like endoglucanases 20 179 IPR036908 -
Sebi427g00031 272 CDD DPBB_EXPA_N 27 156 - -
Sebi427g00031 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Sebi427g00031 272 FunFam Expansin 18 157 - -
Sebi427g00031 272 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Sebi427g00031 272 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Sebi427g00031 272 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Sebi427g00031 272 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Sebi427g00031 272 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Sebi427g00031 272 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Sebi427g00031 272 Pfam Lytic transglycolase 63 151 IPR009009 -
Sebi427g00031 272 Gene3D - 158 254 IPR036749 -
Sebi427g00031 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00031 Sebi-Chr427 316327 317451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00031 5 250 Expansin Gene Family AT4G01630 76.518 1.03e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00031 - - gmx:100813434 462.225