Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00021 ATGGCTTCTTCTATCACAGTAATAGGTGCTTCTTCCGCATATCAAGCTCCCTCTCTCGAACTATATAAGAAGCCAACCACCACTTCTACTTCCTCCGTTAGGCTCCAATGTCTAGACACCAAATCCCGCTCTAACTACCTCCTCAGAGCTCACCGTCACCCTAACTTCGATAGGTTTGTTCCTTCCGCCATTGCTACCCCCAATTCTTCTTCTTCTTCCCTCCTAAGTGAAGAAGCTTTCAAAGGGATAGGTCGTGACTTCACTCAAAACGACGACTCTGAAACGGAGGAGCCATCTCCTGCTAACGTGGACGAACTCGACGTTTCCAAGCTCGGCTTGCCCTCCCGCCTCGTCGACTCACTCCAGAACCGTGGGATTACCCATCTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGGACAGGGAAGACATTAGCATTTGGGATTCCAATTATTAAAGGTCTCACTGAAGATGAGCATGCAGGTTCACACAGGAGGTCTGGTCGTCTTCCTAGAGTTTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAGGTGGAGAAGGAGATAAAAGAATCTGCGCCTTATCTAAACACAGTCTGTGTTTATGGGGGTGTTTCTTATGTTACCCAGCAAAGTGCACTTACACGTGGCGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGATCTAATAAATGGAAACAGCCTTAAGCTGAGCGAAGTTCAGTATTTGGTCCTAGATGAAGCTGATCAGATGCTTGCAGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAAAAACTCCCAGCTGAGAGACAGAGCATGCTTTTCTCTGCCACCATGCCTGGCTGGGTGAAGAAATTGGCTAGAAAATATTTGGACAATCCATTAACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGAATAAAACTTTATGCTCTATCAGCCACTGCCACTTCAAAACGGACAATTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACTCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAACTTCTGAAGCACTGCACGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCAGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTACGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGGCGTGCAGGAAAACAAGGTACTGCTATTTTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTGGGCTGCAAATTTGAATTTGTTAACGCACCAGCTATGGAAGATGTTTTGGAGTCATCCGCTGAGCAAGTTGTTGCTACACTTAATGGAGTTCATCCTGAGTCTGTTGCATTTTTTACCCCAACTGCTCAAAAACTGATTGATGAACAAGGAACAAGTGCCCTCGCAGCTGCACTAGCACAACTGAGTGGATTCTCCCGACCTCCATCATCCCGGTCTCTCATCACCCATGAACAGGGATGGGTTACATTGCAATTGACTCGAGATTCAGAAAATTCTAGAAGATATTTTTCAGCAAGATCGGTCACTGGGTTTCTTTCTGATGTTCATTCTGCAGCTGCGGATGAAGTGGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAGGTACTTGATAAGGACATACCACCTGGAAACACTATTTCCAAGATCACTAAGTTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATAGAAGTAGCCGAAAAGGTTCCACTTCTAGGGATCGAAGAGGTTTTAAAACCTCACGGGGATGGGATGGGGGCCGAGACTCTGATGATGAGTTTGGTGATTCATTTAGGAGAGGTGGTAGAAGTTATAAAACTGGCAACAGCTGGTCTCGAGGAGCAAAAAGGAGTGAGGGTGATTGGCTGATTGGAGGCAGACGATCAAGCAGGTCTTCTTCATCAGACAGAGCCAGAGGTGGCAAAGGTGGAGGCATAGGTGGAGGAATTGGAGGTGGTTCTGGCGGAGGCTATGGAGGTGGAAAAGGTGGAGGAGTTGGAGGTGGACATAGTGGTGGCATAGGAGGTGGTGCTGATGGGGGCCATGGAGGTGGCATTGGTGCTGGTGGAGGCTATGGAGGTGGTAAAGGTGGTGGATTTGGAGGAGGAGTTGGCGGTGGGCATGGTGGCGGTTCTGGAGGAGTTGGTGGTGACTTTTAA 2424 0.462 MASSITVIGASSAYQAPSLELYKKPTTTSTSSVRLQCLDTKSRSNYLLRAHRHPNFDRFVPSAIATPNSSSSSLLSEEAFKGIGRDFTQNDDSETEEPSPANVDELDVSKLGLPSRLVDSLQNRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHAGSHRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALTRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKLPAERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYALSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFVNAPAMEDVLESSAEQVVATLNGVHPESVAFFTPTAQKLIDEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWVTLQLTRDSENSRRYFSARSVTGFLSDVHSAAADEVGKIHLIADERVQGAVFDLPEDIAKEVLDKDIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRSSRKGSTSRDRRGFKTSRGWDGGRDSDDEFGDSFRRGGRSYKTGNSWSRGAKRSEGDWLIGGRRSSRSSSSDRARGGKGGGIGGGIGGGSGGGYGGGKGGGVGGGHSGGIGGGADGGHGGGIGAGGGYGGGKGGGFGGGVGGGHGGGSGGVGGDF 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00021 807 MobiDBLite consensus disorder prediction 85 106 - -
Sebi427g00021 807 MobiDBLite consensus disorder prediction 643 688 - -
Sebi427g00021 807 CDD SF2_C_DEAD 340 457 - -
Sebi427g00021 807 Gene3D - 332 521 IPR027417 -
Sebi427g00021 807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 314 IPR014001 -
Sebi427g00021 807 SMART ultradead3 125 331 IPR014001 -
Sebi427g00021 807 CDD DEADc 117 315 - -
Sebi427g00021 807 Pfam GUCT (NUC152) domain 535 635 IPR012562 GO:0003723|GO:0004386|GO:0005524
Sebi427g00021 807 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 104 676 - -
Sebi427g00021 807 FunFam ATP-dependent RNA helicase RhlE 97 317 - -
Sebi427g00021 807 Pfam DEAD/DEAH box helicase 130 303 IPR011545 GO:0003676|GO:0005524
Sebi427g00021 807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 496 IPR001650 -
Sebi427g00021 807 Pfam Helicase conserved C-terminal domain 340 448 IPR001650 -
Sebi427g00021 807 MobiDBLite consensus disorder prediction 615 807 - -
Sebi427g00021 807 FunFam Nucleolar RNA helicase II 336 526 - -
Sebi427g00021 807 Gene3D - 107 318 IPR027417 -
Sebi427g00021 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 469 IPR027417 -
Sebi427g00021 807 SMART helicmild6 368 448 IPR001650 -
Sebi427g00021 807 CDD GUCT_Hera 542 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00021 Sebi-Chr427 226077 232746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00021 94 470 Eukaryotic Initiation Factors Gene Family AT1G72730 36.458 2.07e-62 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00021 - - gmx:100789516 1147.11