Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00018 ATGTCCGCCTCAAGGCCTAGCCAATCATCCAGCAATAATTCAGGTAGATCAAGACACAGTGCTAGGATTATTGCTCAGACCACTTTAGATGCAAAACTCCATGCAACTTTTGAGGAGTCCGGTAGTTCCTTTGACTACTCCAATTCGGTGCGATTTTCTCCTGGTACTGATACAGCTAGTGGAGACCATCAAGCAAGTTCTGACAGAGTAACAATTGCTTACCTCCATCAGATACAGAAAGGGAAGCTGATCCAGCCTTTTGGGTGCTTGCTAGCTTTAGATGAGAAAACGCGCAAAGTCATTGCTTATAGTGAGAATGCACCTGAAATGCTGACTATGGTTAGTCATGCTGTCCCCAATGTTGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGATCTATTTTTACCTCCCAAAGTGCTTCTGCATTTCAGAAGGCACTAGGATGTGGGGAGGTTTCACTTCTTAACCCCATCCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTGACTGGTAGTTTGATTGTTGATTTTGAGCCAGTTAAGCCTCATGAACATGGAGCTCCCACAACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCAACAAAATCAATAAACCGATTGCAATCTTTGCCTAGTGGGAGCATGGAAACACTCTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGAGTAATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAGGTCAAAAAGCCAGGCCTAGAGCCTTATCTGGGTTTGCACTATCCAGCCACTGATGTTCCCCAGGCTACACGCTTTTTATTTATGAAGAACAAGGTCCGTATAATAGTTGATTGTAGTGCAAAGCATGTAAAGGTGATTCAAGACAAAAATATTCCATTTGATTTAACTTTGTGTGGATCAACCTTAAGGGCTCCTCATAGTTGCCATTTGCAATACATGGAGAACATGAAAGCAAGTGCTTCCCTGGTTATGGCAGTTGTGGTCAATGACAGCAATGAAGACGGTGATAGCTCTGATGCTGTTCAACCACAAAAGAGAAAGAGGCTCTGGGGTTTAGTTGTTTGCCATCATATTACCCCCAAGTTTGTTCCCTTTCCTCTTAGATATGCTTGTGAATTTCTGGCACAAGTATTTGCCATCCATGTTGACAAAGAAATAGAGTTAGAATATCAGGTTATTGAGAGGAATATCCTGCGCACCCAAACCCTCTTGTGTGATATGTTGATGCGAGATGCACCCCTAGGTATTATATCACAGAGCCCTAATATAATGGATCTTGTGAAATGTGATGGAGCAGCTCTCTTGTATAAGAACAATGTATGGAGATTAGGGGTAGCACCGAGTGAATCGCAGATACGGGAGATTGCTTTATGGCTCTCTGAGTGCCATAAGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTCCCAGGGGCTGCTGCTCTTGGTGATATTATATGTGGAATGGCATCTGTGAGAATATCTTCAAATGACATAGTTTTTTGGTTTCGATCACACACTGCTGCAGAAATCAGATGGAGTGGTGCAAAGCATGAACCTGGTGATAAGGATGATGGTAGGAAGATGCATCCAAGATCGTCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCATGGAAGGACTACGAAATGGATGCTATTCATTCATTGCAGCTGATACTGAGAAATGCATTCAAAGATACAGAGATTATGGATATAAGCACAAATGCTATCAATACAAGACTAAGTGATTTGAAGATTGAGGGGATGCAAGAGCTGGAAGCAGTAACAAATGAGATGGTTAGGTTAATTGAAACAGCAACGGTGCCAATTTTTGCAGTTGATGTAGATGGGATGGTCAATGGATGGAATGCAAAATGTTCTGAGTTGACAGGTCTTCCAGTTGAGGAAGCTGTTGGGAAACATTTACTCATGCTTGTTGACGATTTTTCAACAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAAGAAGAGAAGAATGTCCAATTTGAGATGAAAACACATGATTTGAAGATTGATTCTGGTCCTATCTGCTTGGTTGTTAATGCTTGTGTAAGCAGGGATCTTCAACATAATGTTGTGGGAGTTTGTTTTGTAGCCCAAGATATAACTATTCAGAAGACATTCATGGACAAATTCACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAACCCAAACCCGTTGATCCCCCCAATATTTGGCACCGATGAATTTGGCTGGTGTTGTGAATGGAATTCAGCTATGACTAAATTAACTGGATGGAAGCGAGAGAAGGTGATGAATAAAATGCTTTTAGGAGAGGTTTTTGGGACCCAGATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTGTTGTTAATTTTAGCATTGTACTTAATAAAGCGATGACTGGTTTGGAAACAGAGAAAGTTTCTTTCGGTTTCTTCACTCGGAATGGGAAGTATGTAGAATGCCTTCTTTCTATGAGTACAAAAGTGGACATAGAGGGTGTAGTTACTGGAGTCTTCTGCTTCTTGCAGCTCGCTAGTCCAGAGCTGCAACAAGCATTACATATTCAGCACCTATCTGAACAAACTGCCTTGAAGAGACTAAAAGCTTTAACTTACATGAAAAGGCAAATCCGAAACCCTTTATGTGGAATTGTATTCTCCTGGAAACTGTTAGAGGGTACTGAGTTGGGAACTGATCAAAAACAACTTCTGCATACTGGCACTCAGTGCCAACGCCAGCTTAGCAAAATTCTGGATGACTCAGATCTTGACAGCATCATTGATGGCTACTTGGATTTGGAGATGGTTGAATTCACTCTGCAGGAAGTCTTGGTTGCCTCCCTAAGTCAAGTTATGACAAAGAGTAGTGCAAAGGGTATCCAAGTAGTCAGTGATGTTGCAGAGGAGATCACAACAGAAACCTTATATGGTGATAGTCTTAGGCTTCAGCAGGTCTTATCTGACTTTTTATTGATTTCCATCAATTCTACACCAACTGGAGGTCAGGTTGTTGTATCTGCCTCTTTAACCAAAGATCGTCTAGGGAAATTAGTCCAACTTGCTTATTTGGAGCTCAGCATAACACATGATGGTTTTGGGGTACCAGAAGCATTGCTGAACCAGATGTTTGGACGTGATGGACATGAATCTGAAGAGGGCATTAGCCTGCTCATCAGCAGAAAGCTGCTAAAGCACATGAGTGGAGATGTACGTTATATAAGAGAATCAGGCAAATCATCTTTCATCTTGTCTGTTGAACTTGCCATGTCTCATAAATTGGGGGCTTAA 3393 0.4209 MSASRPSQSSSNNSGRSRHSARIIAQTTLDAKLHATFEESGSSFDYSNSVRFSPGTDTASGDHQASSDRVTIAYLHQIQKGKLIQPFGCLLALDEKTRKVIAYSENAPEMLTMVSHAVPNVGDHPALGIGTDIRSIFTSQSASAFQKALGCGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIVDFEPVKPHEHGAPTTAAGALQSYKLATKSINRLQSLPSGSMETLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVKKPGLEPYLGLHYPATDVPQATRFLFMKNKVRIIVDCSAKHVKVIQDKNIPFDLTLCGSTLRAPHSCHLQYMENMKASASLVMAVVVNDSNEDGDSSDAVQPQKRKRLWGLVVCHHITPKFVPFPLRYACEFLAQVFAIHVDKEIELEYQVIERNILRTQTLLCDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNNVWRLGVAPSESQIREIALWLSECHKDSTGLSTDSLSDAGFPGAAALGDIICGMASVRISSNDIVFWFRSHTAAEIRWSGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDTEIMDISTNAINTRLSDLKIEGMQELEAVTNEMVRLIETATVPIFAVDVDGMVNGWNAKCSELTGLPVEEAVGKHLLMLVDDFSTDRVKKMLDMALQGEEEKNVQFEMKTHDLKIDSGPICLVVNACVSRDLQHNVVGVCFVAQDITIQKTFMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMTKLTGWKREKVMNKMLLGEVFGTQMACCRLKNQEAVVNFSIVLNKAMTGLETEKVSFGFFTRNGKYVECLLSMSTKVDIEGVVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLCGIVFSWKLLEGTELGTDQKQLLHTGTQCQRQLSKILDDSDLDSIIDGYLDLEMVEFTLQEVLVASLSQVMTKSSAKGIQVVSDVAEEITTETLYGDSLRLQQVLSDFLLISINSTPTGGQVVVSASLTKDRLGKLVQLAYLELSITHDGFGVPEALLNQMFGRDGHESEEGISLLISRKLLKHMSGDVRYIRESGKSSFILSVELAMSHKLGA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00018 1130 Gene3D PAS domain 616 752 - -
Sebi427g00018 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 853 1113 - -
Sebi427g00018 1130 Gene3D - 205 568 IPR029016 -
Sebi427g00018 1130 MobiDBLite consensus disorder prediction 1 20 - -
Sebi427g00018 1130 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Sebi427g00018 1130 Pfam PAS fold 756 878 IPR013767 GO:0006355
Sebi427g00018 1130 Pfam PAS fold 626 740 IPR013767 GO:0006355
Sebi427g00018 1130 Pfam PAS fold 73 189 IPR013654 GO:0006355
Sebi427g00018 1130 SUPERFAMILY GAF domain-like 415 593 - -
Sebi427g00018 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 191 IPR035965 -
Sebi427g00018 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 224 397 IPR016132 -
Sebi427g00018 1130 ProSiteProfiles Histidine kinase domain profile. 907 1126 IPR005467 -
Sebi427g00018 1130 ProSiteProfiles PAS repeat profile. 623 693 IPR000014 -
Sebi427g00018 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 876 IPR035965 -
Sebi427g00018 1130 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 324 345 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 239 258 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 PRINTS Phytochrome signature 137 159 IPR001294 GO:0006355|GO:0009584
Sebi427g00018 1130 Pfam GAF domain 224 407 IPR003018 GO:0005515
Sebi427g00018 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 962 1116 IPR036890 -
Sebi427g00018 1130 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Sebi427g00018 1130 Gene3D PAS domain 77 327 - -
Sebi427g00018 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 736 IPR035965 -
Sebi427g00018 1130 SMART gaf_1 224 417 IPR003018 GO:0005515
Sebi427g00018 1130 Gene3D PAS domain 769 881 - -
Sebi427g00018 1130 SUPERFAMILY GAF domain-like 204 404 - -
Sebi427g00018 1130 CDD PAS 634 740 IPR000014 -
Sebi427g00018 1130 SMART pas_2 625 691 IPR000014 -
Sebi427g00018 1130 SMART pas_2 755 824 IPR000014 -
Sebi427g00018 1130 PIRSF Phytochrome_conventional 1 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Sebi427g00018 1130 Gene3D - 963 1128 IPR036890 -
Sebi427g00018 1130 NCBIfam PAS domain S-box protein 630 745 IPR000014 -
Sebi427g00018 1130 CDD PAS 767 878 IPR000014 -
Sebi427g00018 1130 SMART HisKA_10 900 965 IPR003661 GO:0000155|GO:0007165
Sebi427g00018 1130 FunFam Phytochrome 619 750 - -
Sebi427g00018 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 324 333 IPR013516 -
Sebi427g00018 1130 SMART HKATPase_4 1012 1124 IPR003594 -
Sebi427g00018 1130 Gene3D - 412 585 IPR043150 -
Sebi427g00018 1130 FunFam Phytochrome 412 543 - -
Sebi427g00018 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1012 1120 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00018 Sebi-Chr427 183282 187566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00018 1 1127 Histidine Kinase Gene Family AT1G09570 74.291 0.0 1756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00018 K12120 - gmx:100791098 1857.03