Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00012 ATGCCTCTGCGTGAGTTATACCGCATGGTTAATGGGAAAGTTGTTGATCACAAAGAGATGAACAACAACACAAGTGCAACTGATCAATCTTCTGTGGACACTCAGAAACACTCTTCACATCATGTTTTAAGTTCAGAACATGGAATCCTTTCTAAGGGCTGTTCAACTGTAGCTGGAGAAGTTGAGACCCCAGGACCTAAAGCTAGCACAAGTCATTTATACCCTCCATCAATTTTGCATCAATGTCAAACATCATTTGCATCTGTTAGACCCAAAGAATCAGATATAGCTGAAAATAATACAAGTAATGCAACCCAGCATGCACCTTGTGGGGAAATCACACAGATTCTATCTGCCTCTAGTGGAAAGATGGAGAGGAGAGATCCAATTATGTCTAGCAATAGTTCGACCATAATGAATTTCTCCCATTTTGCAAAACCTGCTGCTGTTGTGAAAGCTAATCTTCAGAACATGGCCTTGACTTCTGGTTTGTCTTCACCAAGATCAGAAAGTGTGGGAATAAAGAATAAAGGTGCTGCTGCAACTAGAATCAATGCTCCTGAATCAACAAAAGTTGATTTAAGCGGCGAATGTCCAAAGAAATCAGCCATACACAGTCAGCAGGTTATGGAGCCATCCAAGGTTGATTTGAAACCGTTGGAGCCAAAATCTCTTGAGCAGGATGCTGCTGTTGCTGCTTGCAAAGAAGATGTGTCTAAGATTGATCAAACTTCTAATAAAGTTATTGGTGAAAGTGGCAGAAAAGGTTTGGAAGCTGTTGAAAGAAGCATGGAACCAGCAGTAGTATCTTCCTCTGTTTGCTCTGCCAATGGTGCAGGGAGAGGTTCAGATGACCCAGATCAAAGTTTGAAGAGAAAAAGTCATGACACTGAGGACTCTGAGTGGCATAGTGAAGATGTTGAGGAAGAATCAGTGGGTCTTAAAAAGGCAGCTCGTGCACGAGGGGGTATGGGTTCCAAGAGAAACCGCTCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCTATGCTTGATGAGGCTATTGAGTATCTTAAAACACTTCAATTCCAACTTCAAATCATGTCAATGGGAGGTGGTTTATATATGCCTACAATGATGTTACCTCCAGGAATGCAGCACATGCATGCACCACATATGTCTCCTTTTTCACCTATGGGTGTTGGCATGCAAATGGGGTTGGGAGTGGGTTATGGAATGGGCAGGCCTGACATTAATGATGGATCTTCTAGATTCCCAATGGTTCAAATGCCCCAAATGCAAGGAACTCATCTACATACATCTGGATCCACTGCTTTGCATGGGATGGCAAGATCAAATCCTCAAGTGTTTGGACTTCCTGGCCAGGGACTCCCCATGTCAATGCCATGTGCTCCAATATTTTCTTTTCCCGGACCAGGAGAGCCTCCTATGAACCCATCAGCTGTAGGAGTAAATGCTTGTGGAACATCAGGACTTAGGGAAACTGTGGAATCAGCTTCAGCCTCTACCTTAAAGGATCCAATGCCAAATGTGAACTCACAAGCTATACAAAATGCTGGTGGCTGTAACCCAACAAATCAGATGTCTACACAGTGTGAAGCAGCAACTGGTGGATTTGAACACTCAACTTTGGTACTTAATGGTCTTGCCTCTTCAGTGAATGACAGAGGAGCTGTTAAGTCGGGTAAAGAAGACAACCATGTGAATGATAAATCTCATGAGTTATGA 1803 0.4293 MPLRELYRMVNGKVVDHKEMNNNTSATDQSSVDTQKHSSHHVLSSEHGILSKGCSTVAGEVETPGPKASTSHLYPPSILHQCQTSFASVRPKESDIAENNTSNATQHAPCGEITQILSASSGKMERRDPIMSSNSSTIMNFSHFAKPAAVVKANLQNMALTSGLSSPRSESVGIKNKGAAATRINAPESTKVDLSGECPKKSAIHSQQVMEPSKVDLKPLEPKSLEQDAAVAACKEDVSKIDQTSNKVIGESGRKGLEAVERSMEPAVVSSSVCSANGAGRGSDDPDQSLKRKSHDTEDSEWHSEDVEEESVGLKKAARARGGMGSKRNRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQFQLQIMSMGGGLYMPTMMLPPGMQHMHAPHMSPFSPMGVGMQMGLGVGYGMGRPDINDGSSRFPMVQMPQMQGTHLHTSGSTALHGMARSNPQVFGLPGQGLPMSMPCAPIFSFPGPGEPPMNPSAVGVNACGTSGLRETVESASASTLKDPMPNVNSQAIQNAGGCNPTNQMSTQCEAATGGFEHSTLVLNGLASSVNDRGAVKSGKEDNHVNDKSHEL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00012 600 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 389 IPR036638 GO:0046983
Sebi427g00012 600 CDD bHLH_AtPIF_like 330 392 IPR047265 -
Sebi427g00012 600 PANTHER TRANSCRIPTION FACTOR PIF3 62 554 IPR044273 GO:0003700|GO:0006355
Sebi427g00012 600 MobiDBLite consensus disorder prediction 579 600 - -
Sebi427g00012 600 Pfam Helix-loop-helix DNA-binding domain 334 380 IPR011598 GO:0046983
Sebi427g00012 600 SMART finulus 336 385 IPR011598 GO:0046983
Sebi427g00012 600 MobiDBLite consensus disorder prediction 285 316 - -
Sebi427g00012 600 MobiDBLite consensus disorder prediction 18 49 - -
Sebi427g00012 600 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Sebi427g00012 600 MobiDBLite consensus disorder prediction 583 600 - -
Sebi427g00012 600 MobiDBLite consensus disorder prediction 18 38 - -
Sebi427g00012 600 MobiDBLite consensus disorder prediction 326 345 - -
Sebi427g00012 600 Gene3D - 325 387 IPR036638 GO:0046983
Sebi427g00012 600 MobiDBLite consensus disorder prediction 261 345 - -
Sebi427g00012 600 FunFam Basic helix-loop-helix transcription factor 325 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00012 Sebi-Chr427 112353 115929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00012 125 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 42.643 2.88e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi427g00012 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00012 K12126 - gmx:100794974 674.855