Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi427g00005 ATGGTTGTCTCCATGTTGCTGATAGCATTGGTTACCATAGCTGTTGTTGCCAACATAGACGGTTCCAAACAAGGCGCAGGGACTATGAAGACCCTTCTCTCTGTTTGTGGAAAAACAGAGGAACCAGAAAGTTGTGTCCATGTCTTAAAAAACGTTGGTGAAAGAGCCACAATTTTGGATTATGTTAAAGCTTCTATCAACGCAACCCTCGAAGAAATGCTGGTTGTGAACATGCCTAAACCTTATCTTGAAAAAAGCCTCACACCTCTACAGCAAATGTCATATAGAGATTGTTTGGAACTCTTAATTTTGGGAAAGGAAGAACTAGAATCCTTGTATACCATGATTACAAATTCGTTTGCTAACATGTCCATGATAGACCCTGATGATGTTATCAACAGCCTAAGTGCTGTCATTTCATACCAACAAACTTGTTCTGATTTGTTAATTAGAACAAACAACTATGAAATTTTGGGGTATTCATTGAAAATACCAATTATGGTTACAAGAATGACCTTAGCCATTGTTAATAATTTCAGTGAGTGGCCTAAAAATGGGGACCACAAGCAGAATGAAATTCCAACATTGTTTACAGGAGCAGAGCGCCAACTGATAGAGTTTCAAAGAAATCTTGGTGATAAGCAGCCATATGCAGTTGTGGCTCAAGATGGAAGTAGCCAATTCTCAACCATTTCTGAGTCACTCAATGCATGCTCAAAGAGTAACCAGAGTCCTTGTATTATTTACGTGAAAAAGGGTAAATATGAGGAAAGAGTGGTGGTTCCGAAGGATCTAAACCAAGTTGTCATGTATGGTGATGGCCCTGCAAATACCATTGTCACTGGAATCACCACAAGAGACCCCAACATGGTTACAACCACTCTCCGGGCAGCTACTTTTGTGGTAATGGGGAAAGGGTTTATATGCAAAAATATGGGTTTCACTGCCCCAGCTGATATTATAGGAGCACCAGCAGTTCTTGTCTTTTCTGATCATGCAGCATTCTTCAACTGCAAAATTGATGGTGAGGAAGGGAGCCTCTATGCAGTAGCCCAACGCCAATTCTACAGAGACTGTGAGATTCATGGGAGTGTGGACATCATCAAAGGAGACTCTGCAACTCTAATTCAGAACTCACAAATCATTGTGAAGCCTAGAAATTCTTCTCATTCAGTTTTAAGCAAAAATGTGGTAACTGCTCAATCAAGGTTGGACAAGTATGAGAGAACTGGTTTTGTGATTCAAAACTGCAGCATCACAGCACAAGGGGAAAGTGGCAATAGTCTTGTTGCTACAACTTATTTGGGCACCCCATGTAATGAATACTCAAGAACAATCATAATGGAATCATTTTTAGGAAATGTGATACATCCAGAAGGGTGGTGCAAATGGAGTGACGACTATGGCATTGAAACAGCAACATTCCGTGAGTTTAATAACAGAGGGCCTGCTGCAAAAACTTTTACGAGGGTCAATTGGGATAGCTACCGAACAATTATTCAGAGAAGTGAAATGGCGAGTTTCACAGCTACTCAGTTTCTTCAATCAGAAAAATGGTTGCAAAGTACAGGAATTCCGTACGATTCTGGATTTGTTTACCACAAGGAAAATGATGAGTATACACAACATGGGGCTGTGCGCAACCATGGATAA 1653 0.4053 MVVSMLLIALVTIAVVANIDGSKQGAGTMKTLLSVCGKTEEPESCVHVLKNVGERATILDYVKASINATLEEMLVVNMPKPYLEKSLTPLQQMSYRDCLELLILGKEELESLYTMITNSFANMSMIDPDDVINSLSAVISYQQTCSDLLIRTNNYEILGYSLKIPIMVTRMTLAIVNNFSEWPKNGDHKQNEIPTLFTGAERQLIEFQRNLGDKQPYAVVAQDGSSQFSTISESLNACSKSNQSPCIIYVKKGKYEERVVVPKDLNQVVMYGDGPANTIVTGITTRDPNMVTTTLRAATFVVMGKGFICKNMGFTAPADIIGAPAVLVFSDHAAFFNCKIDGEEGSLYAVAQRQFYRDCEIHGSVDIIKGDSATLIQNSQIIVKPRNSSHSVLSKNVVTAQSRLDKYERTGFVIQNCSITAQGESGNSLVATTYLGTPCNEYSRTIIMESFLGNVIHPEGWCKWSDDYGIETATFREFNNRGPAAKTFTRVNWDSYRTIIQRSEMASFTATQFLQSEKWLQSTGIPYDSGFVYHKENDEYTQHGAVRNHG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi427g00005 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Sebi427g00005 550 PANTHER PECTINESTERASE 11 521 - -
Sebi427g00005 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 180 IPR035513 -
Sebi427g00005 550 Pfam Pectinesterase 218 516 IPR000070 GO:0030599|GO:0042545
Sebi427g00005 550 SUPERFAMILY Pectin lyase-like 217 529 IPR011050 -
Sebi427g00005 550 FunFam Pectinesterase 4 214 531 - -
Sebi427g00005 550 SMART PMEI_2 27 175 IPR006501 GO:0004857
Sebi427g00005 550 Gene3D - 212 531 IPR012334 -
Sebi427g00005 550 CDD PMEI-like_3 34 180 - -
Sebi427g00005 550 Pfam Plant invertase/pectin methylesterase inhibitor 34 150 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi427g00005 Sebi-Chr427 38215 40174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi427g00005 2 532 Carbohydrate Esterase AT3G05610 32.504 3.77e-84 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi427g00005 K01051 - gmx:102665007 708.368