Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi425g00009 ATGGCCACCACTCATTCGCTTCTACACTCATATGGGTCCTCCTTTCTAGCTCAATTTCGTACCTTTCCACCTCAAATGTCTTCTTCAGTGCTCCATCATGGAAACAGGCATGGAAATGCAGTGGTGTTCGTGAAGGCCACAGCTGCTGGGGCTGTGCTGGTAGAGAAGTCTGAGGTTGAGAAGGTGCCTAAAATTGAGAAGATTGTGGTTAACTGCGGTATTGGAGATGCTGCACAAAATGCAAAAGATTTGGAAGCGGCAATTAGTGATCTAGCATTAATCACTGGGCAGAGACCTGTTAAGACTCGGGTCAGGGCTTCCGTTGCCACCTTTAAGATCAGGGAAGGTCAACCTCTTTGGATTGCTGTGACACTTAGAGGAAGTATGATGTACTCATTCCTAGACCGAGTTGTCAAATTGGAACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACTCAAACAACTTTGATGGGAATGGGATTTTCAACATTGGCATTAAGGAACAGGGTGTGTTCCCAGAGATTAGAGCTGATGTTATTGGTAAGCCAAGGGGAATGGATATTTGCATCACAACAACAACTAAAACTGATCAAGAAGCATAG 603 0.4478 MATTHSLLHSYGSSFLAQFRTFPPQMSSSVLHHGNRHGNAVVFVKATAAGAVLVEKSEVEKVPKIEKIVVNCGIGDAAQNAKDLEAAISDLALITGQRPVKTRVRASVATFKIREGQPLWIAVTLRGSMMYSFLDRVVKLELPRTRDFQGVNSNNFDGNGIFNIGIKEQGVFPEIRADVIGKPRGMDICITTTTKTDQEA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi425g00009 200 FunFam 50S ribosomal protein L5 48 200 - -
Sebi425g00009 200 Pfam Ribosomal protein L5 61 114 IPR031310 -
Sebi425g00009 200 Pfam ribosomal L5P family C-terminus 122 200 IPR031309 -
Sebi425g00009 200 SUPERFAMILY RL5-like 57 200 IPR022803 -
Sebi425g00009 200 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 56 198 IPR002132 GO:0003735|GO:0005840|GO:0006412
Sebi425g00009 200 Gene3D - 52 200 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi425g00009 Sebi-Chr425 146720 149032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi425g00009 64 169 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 30.275 9.09e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi425g00009 K02931 - gmx:100800193 272.322