Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi425g00007 ATGTCAATCTTCGATGGAGCTTTCATGGACACACAACTCTCCAAACACACCTCAATCTTCGGTCTCCGTCTCTGGGTTGTCATTGGAATCCTCATCGGCGCTCTCATAGTCTTCACCCTCTTCCTCCTCTCTCTCTGCCTTGTCTCTCGCCAGCGCAACCGCCGCTCCAGCCCCGTCGACTACAAGCTTGCCGGAGACCCTCTTCCGTCCAAGGAAATCCAGGAGATCGTGCACCTTCCGGGACCCCACATGCTCCGGAGACCGGCGCCGGGGAAGGTGCCAGAGATCCACGTGGACATAGGCAAGGCAGAGCACAGGGTGGTGGTGCAGTCTGATAGGGTTTCCAGTGGAGAGAGCAAGGGAACAGGGGTGAGTGGGTGTGAAACGACGTCGTCGTTTGGGAGTGTCATTGTTGGTGGGATTGGACCTGAGGTGTCGCATCTTGGGTGGGGTAGATGGTACACTTTGAGGGAGCTTGAGGATGCTACTGGTGGGTTGTGTGAGGAAAATGTGATTGGTGAAGGTGGTTATGGGATTGTGTATCAAGGGGTGCTCAGTGATGGTACCAAGTCTTCAATGATTTTCCTGATGGCAATTGGCAACCAACCAGGTTATCCTGGGCAAGGATATCAGCTTTTTGTTGACTTATCACTTAAGTGGGGGGCTCACTCATGTGAAGAAAAGAATCATTTTCCTTTTCAGCTCCTTGCTCTTATACTCTATCCAATTGATAATGTTGTCATTTGTCAGGAGTTTTGCACCCTCATGGGCCAAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTAGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCCTACAGGATGCTTGTGTATGAATATGTTGACAATGGCAATCTAGAACAGTGGCTACATGGGGATGTTGGAGCTGTAAGCCCTTTGACATGGGATATACGCATGAACATTATTTTGGGAACTGCAAGAGGATTGGCTTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCACAGAGATGTGAAATCAAGCAACATACTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGCTTTGGGATACTTATCATGGAGATAATTACTGGGAGAAGTCCTGTTGATTATAGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGAAATAGAAAATCTGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATCTTCAAAGGCCCTTAAACGTGCCTTGTTGATTGCCCTTCGGTGTGTTGATCCTGATGCAACAAAAAGGCCTAAAATGGGACATGTGATCCACATGCTTGAAGTAGATGACCTGTTATTCAGTAATGAACGTAGAACTGGGGGAGAATCTTCACGTTCCCATCATGATTATCAACCAGAGCATAAGGACTCAAACTTAGATAAGAGGACAGATGGAGGGATCATTGATCAAAGTGAAGATAGTGGTAGAAATCATCAGCAATCCAATAGGTGGAGATGA 1599 0.4672 MSIFDGAFMDTQLSKHTSIFGLRLWVVIGILIGALIVFTLFLLSLCLVSRQRNRRSSPVDYKLAGDPLPSKEIQEIVHLPGPHMLRRPAPGKVPEIHVDIGKAEHRVVVQSDRVSSGESKGTGVSGCETTSSFGSVIVGGIGPEVSHLGWGRWYTLRELEDATGGLCEENVIGEGGYGIVYQGVLSDGTKSSMIFLMAIGNQPGYPGQGYQLFVDLSLKWGAHSCEEKNHFPFQLLALILYPIDNVVICQEFCTLMGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPLTWDIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGFGILIMEIITGRSPVDYSRPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEVDDLLFSNERRTGGESSRSHHDYQPEHKDSNLDKRTDGGIIDQSEDSGRNHQQSNRWR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi425g00007 532 SMART serkin_6 166 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi425g00007 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Sebi425g00007 532 SUPERFAMILY Protein kinase-like (PK-like) 146 475 IPR011009 -
Sebi425g00007 532 ProSiteProfiles Protein kinase domain profile. 166 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi425g00007 532 Gene3D Phosphorylase Kinase; domain 1 242 297 - -
Sebi425g00007 532 MobiDBLite consensus disorder prediction 484 532 - -
Sebi425g00007 532 Gene3D Transferase(Phosphotransferase) domain 1 389 484 - -
Sebi425g00007 532 Gene3D Transferase(Phosphotransferase) domain 1 298 388 - -
Sebi425g00007 532 Gene3D Phosphorylase Kinase; domain 1 143 199 - -
Sebi425g00007 532 PANTHER OS01G0323000 PROTEIN 247 495 - -
Sebi425g00007 532 Pfam Protein kinase domain 260 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi425g00007 532 FunFam Os07g0541700 protein 298 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi425g00007 Sebi-Chr425 119877 123159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi425g00007 109 522 Trihelix Transcription Factor Family AT1G70460 32.895 1.23e-59 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi425g00007 Pkinase 9.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi425g00007 - - tpra:123889015 698.738