Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi424g00012 | ATGGCCGTTATATCTTTCTCTTTGCTTCCACCATCCTCCACTCGCTCTTGCTTCTGTGGCGGGATCCATCTCTCTTCCCACAAGAACTTCATCTCGATTCATTCCCCTTCTTCCTTTCCTTCTTTCTCCTCAAACGCTAACTCAAATTCAAAGGTCTCTAGCAGAGGAAGGCGTTTTCACACTGTCCTTGCTGCTTCCGCTGACTACTATGCTACTCTCGGAGTTCCCAAATCCGCTACCGGCAAGGAAATCAAAGCTGCTTATCGAAGGTTAGCTCGTCAGTACCATCCTGATGTGAATAAGGAACCGGGGGCAACTGATAAGTTCAAAGAGATTAGTGCTGCATATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCAGGAGTTAAGAGTACAGTGGGAGGTGCATCAAGTGCCTATACGACAAATCCATTTGATTTGTTTGAGACATTTTTTGGGCCAAGTATGGGTGGCTTTGGTGGCATGGATCCAACTGGATTTGGAACACAACGTCGTAGTACTGTTACTAAGGGTGAAGACATCCGGTATGATTTCTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTTGAGCTTTCCCATTTGGAAACATGTGAAGTTTGTACTGGTACTGGAGCAAAGATAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCATTTGGAATGTTCTCACAGGTTTCAGTATGTCCAACTTGTGGAGGTGATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGCATACGGGTGAAGAAAAATATAAAAGTTAAAATTCCTCCTGGGGTTAGCTCAGGCAGTATCCTAAGAGTTGCTGGGGAGGGTGATGCTGGACCAAGAGGGGGCCCTCCAGGAGATCTTTATGTATATCTTGGTGTGGAAGAGATACCAGGAATTCAAAGAGATGATATTAATCTCCTCTCAACAATATCAATCAGTTATCTAGATGCTATACTGGGGACTGTTGTGAAGGTAAAGACAGTTGAAGGCATTTCTGAACTACAAATACCTGCTGGTACACAACCTGGAGATGTCCTTGTCCTTGCAAGGAAAGGTGTGCCAAAATTAAACAAACCATCAATACGTGGTGACCACTTATTCACAGTTAAAGTTACAATACCAAAACGTATCAGTACAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCTCTAGTTGACACAAGCAGTCGTTCAAAATCTCGGCCTAAGACTCACTCTTCCACAAAAAGTACGGAAGGTCCTGCAGCTAAAAAGGCTGAAAGTCCAACAGCAACAGTCGCAGAAAAAACTGAAAAATCAGAAGACCAAGATGATTTATGGAATAAATTTAAGGACTTTGCTGGGTCTGTGGCAAATGGAGCTCTAAAGTGGCTTAATGATAACCTCTAG | 1485 | 0.4337 | MAVISFSLLPPSSTRSCFCGGIHLSSHKNFISIHSPSSFPSFSSNANSNSKVSSRGRRFHTVLAASADYYATLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATDKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGASSAYTTNPFDLFETFFGPSMGGFGGMDPTGFGTQRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELSHLETCEVCTGTGAKIGSKMRVCSTCGGRGQVMRTEQTPFGMFSQVSVCPTCGGDGEVISEYCRKCNGEGRIRVKKNIKVKIPPGVSSGSILRVAGEGDAGPRGGPPGDLYVYLGVEEIPGIQRDDINLLSTISISYLDAILGTVVKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELASLVDTSSRSKSRPKTHSSTKSTEGPAAKKAESPTATVAEKTEKSEDQDDLWNKFKDFAGSVANGALKWLNDNL | 494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi424g00012 | 494 | Gene3D | - | 215 | 279 | - | - | |
| Sebi424g00012 | 494 | Hamap | Chaperone protein DnaJ [dnaJ]. | 65 | 478 | IPR012724 | GO:0005524|GO:0006457|GO:0009408|GO:0051082 | |
| Sebi424g00012 | 494 | FunFam | Chaperone protein dnaJ A6 chloroplastic | 215 | 279 | - | - | |
| Sebi424g00012 | 494 | NCBIfam | molecular chaperone DnaJ | 68 | 422 | IPR012724 | GO:0005524|GO:0006457|GO:0009408|GO:0051082 | |
| Sebi424g00012 | 494 | SUPERFAMILY | DnaJ/Hsp40 cysteine-rich domain | 202 | 282 | IPR036410 | - | |
| Sebi424g00012 | 494 | ProSiteProfiles | Zinc finger CR-type profile. | 202 | 284 | IPR001305 | GO:0031072|GO:0051082 | |
| Sebi424g00012 | 494 | CDD | DnaJ | 68 | 121 | IPR001623 | - | |
| Sebi424g00012 | 494 | SUPERFAMILY | Chaperone J-domain | 64 | 174 | IPR036869 | - | |
| Sebi424g00012 | 494 | Gene3D | - | 185 | 321 | - | - | |
| Sebi424g00012 | 494 | MobiDBLite | consensus disorder prediction | 456 | 470 | - | - | |
| Sebi424g00012 | 494 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 183 | 338 | IPR008971 | GO:0006457|GO:0051082 | |
| Sebi424g00012 | 494 | FunFam | Chaperone protein dnaJ A6 chloroplastic | 65 | 171 | - | - | |
| Sebi424g00012 | 494 | PANTHER | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED | 38 | 432 | - | - | |
| Sebi424g00012 | 494 | Pfam | DnaJ domain | 68 | 129 | IPR001623 | - | |
| Sebi424g00012 | 494 | Pfam | DnaJ central domain | 215 | 279 | IPR001305 | GO:0031072|GO:0051082 | |
| Sebi424g00012 | 494 | FunFam | Molecular chaperone Hsp40/DnaJ family protein | 331 | 423 | - | - | |
| Sebi424g00012 | 494 | Gene3D | DnaJ domain | 65 | 169 | IPR036869 | - | |
| Sebi424g00012 | 494 | CDD | DnaJ_zf | 215 | 279 | IPR001305 | GO:0031072|GO:0051082 | |
| Sebi424g00012 | 494 | FunFam | Putative Mitochondrial DnaJ chaperone | 273 | 321 | - | - | |
| Sebi424g00012 | 494 | Pfam | DnaJ C terminal domain | 188 | 406 | IPR002939 | - | |
| Sebi424g00012 | 494 | CDD | DnaJ_C | 186 | 409 | - | - | |
| Sebi424g00012 | 494 | ProSiteProfiles | dnaJ domain profile. | 68 | 132 | IPR001623 | - | |
| Sebi424g00012 | 494 | SMART | dnaj_3 | 67 | 124 | IPR001623 | - | |
| Sebi424g00012 | 494 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 332 | 417 | IPR008971 | GO:0006457|GO:0051082 | |
| Sebi424g00012 | 494 | MobiDBLite | consensus disorder prediction | 425 | 470 | - | - | |
| Sebi424g00012 | 494 | ProSitePatterns | Nt-dnaJ domain signature. | 109 | 128 | IPR018253 | - | |
| Sebi424g00012 | 494 | Gene3D | - | 331 | 423 | - | - | |
| Sebi424g00012 | 494 | PRINTS | DnaJ domain signature | 88 | 103 | IPR001623 | - | |
| Sebi424g00012 | 494 | PRINTS | DnaJ domain signature | 104 | 124 | IPR001623 | - | |
| Sebi424g00012 | 494 | PRINTS | DnaJ domain signature | 124 | 143 | IPR001623 | - | |
| Sebi424g00012 | 494 | PRINTS | DnaJ domain signature | 70 | 88 | IPR001623 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi424g00012 | Sebi-Chr424 | 427231 | 434846 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi424g00012 | 69 | 175 | C2H2 Transcription Factor Family | AT1G74250 | 38.596 | 1.19e-10 | 62.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi424g00012 | K03686 | - | gmx:100798567 | 814.683 |