Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi423g00072 ATGAAGATCGAGGAATTGGAGGATTTAGAGTGTAGTAGGGATGAAGAGGAGAAATACCAGAGGCAAATTGTGAGGGTTGATGCAAAGAGAGCGTTGGTCGGAGCAGGTGCCCGAATTCTGTTTTATCCGACGCTTTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCCGGTGGTGGGATCAAATTGATGAGTTTTTATTGCTCGGTGCAGTCCCGTTCCCCAAAGATGTTCCTCACTTGAAGGAGCTTGGTGTGGGTGGTGTGATTACTCTGAATGAACCTTATGAAACTTTGGTGCCGTCATCATTATATCATGCTCATGGGATTGATCATTTGGTAATTCCCACAAGGGATTATCTCTTTGCCCCCTCATCTGTGGATATCAGCCGGGCAGTGCAGTTCATTCATCGTGGGTTCTTACTTATTAATTTAATTTTGGGAGGGGTGAGAATGCAACTTGCGGAAAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGAAGGAGTACTACAATTGTGCTCTGTTATCTGGTCGAATACAAGCACATGACACCTGCTGCTGCCCTGGAATATGTGAGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAAGACTATAACAAGCAAAGACCTTGTCCTTTAGCATGCTCTCCCTCTGGGGATGAAGTTCTTATAACCAAAGCTGATCTTGAAGGTTATCATAGCACAAATGATGCTGGTATGGAGCTGGCCATTGTTCCTAAAGTGCCAAAGACTAAGCCCATGATAGCAAGACTATCTTGCCTGTTTGCATCCTTAAAAGTACCCAGTGGTAGTAGTGTACCAATGACGAGGCGGCTGCCAGTCTCTGAGTCACGTGCCTGCTAA 891 0.4545 MKIEELEDLECSRDEEEKYQRQIVRVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPHLKELGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSSVDISRAVQFIHRGFLLINLILGGVRMQLAEKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQDYNKQRPCPLACSPSGDEVLITKADLEGYHSTNDAGMELAIVPKVPKTKPMIARLSCLFASLKVPSGSSVPMTRRLPVSESRAC 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi423g00072 296 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 216 IPR029021 -
Sebi423g00072 296 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 273 - -
Sebi423g00072 296 Pfam Dual specificity phosphatase, catalytic domain 104 216 IPR000340 GO:0008138|GO:0016311
Sebi423g00072 296 ProSitePatterns Tyrosine specific protein phosphatases active site. 162 172 IPR016130 GO:0016311|GO:0016791
Sebi423g00072 296 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 220 IPR020422 GO:0006470|GO:0008138
Sebi423g00072 296 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 162 209 IPR000387 GO:0016311|GO:0016791
Sebi423g00072 296 Gene3D Protein tyrosine phosphatase superfamily 60 218 IPR029021 -
Sebi423g00072 296 CDD PTPMT1 60 217 IPR044596 GO:0004721
Sebi423g00072 296 FunFam Dual specificity phosphatase domain protein 60 220 - -
Sebi423g00072 296 SMART dsp_5 63 217 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi423g00072 Sebi-Chr423 861247 862968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi423g00072 22 275 Protein tyrosine phosphatase (PTP) family AT2G35680 53.401 1.28e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi423g00072 - - gmx:100817410 508.064