Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi423g00063 ATGTCAAATTTACATTCCATTTTCTATGTTTCAGTAGTTCTTCTTATTCTGCAAAATCCCAATGTAGCACAATGCCATACAAAGGGAATTCAACCAAGGCATTCTGTATGGACTGGTGGACTATCAATGAATATGACCAGAATCCAAAACTCAGAACAACAGTTCATGAAATGGGTGAGATTTGTTGGTGGGCTCAGACACTCTATCTTCAGAACAGCCAAAAATAAGCTCTTTCCTTCATACACATTGCACGTTTCTAAGCATGGAGGTAAAGGGGGTTTCTCATCAATTCAAGAAGCCATTGATTCCCTTCCATTCATCAATCTAGTGAGAGTGGTCATTAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTGAGATTCCTCCTTTTAAATCCTTCATAACCATTCAAGGAGCAGGAGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACTCTTGGGCCAAAAGGCCAGCCACTGGGAACCTATGGTTCTGCAACTTTTGCTGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTTCCCCAGTTCCACGACCAGGAGCAGTTGGAAAACAAGCAGTGGCATTGAGAATCTCAGCAGATACAGCAATATTCCTTGGCTGCAAATTCTTTGGAGCACAGGACACACTCTATGATCATGTGGGTAGGCATTACTACAAGGATTGCTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGGTCTCTCTCTGTTTGAGGGGTGTCACGTGCATGCCATAGCACAAAATACAGGGGCCCTAACAGCCCAAGGAAGGAACAGTCTATTAGAAGACACGGGTTTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTATACCTTGGAAGGGCCTGGGGTCCCTTCTCTCGTGTTGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGCTGGTATAATTGGGGCGATCCCAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGTTCAAGCTTTGCAGGGAGAGTATCATGGTCAAGGGAGCTCACCGATGAGGAAGCTAAACCATTTATTTCACTTAGCTACATTGATGGCTCTGAATGGATCAATTCTTTCTTTTGA 1152 0.4332 MSNLHSIFYVSVVLLILQNPNVAQCHTKGIQPRHSVWTGGLSMNMTRIQNSEQQFMKWVRFVGGLRHSIFRTAKNKLFPSYTLHVSKHGGKGGFSSIQEAIDSLPFINLVRVVIKVHAGVYTEKVEIPPFKSFITIQGAGADKTIVQWGDTAQTLGPKGQPLGTYGSATFAVNSPYFIAKNITFKNTSPVPRPGAVGKQAVALRISADTAIFLGCKFFGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQNTGALTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGSSFAGRVSWSRELTDEEAKPFISLSYIDGSEWINSFF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi423g00063 383 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Sebi423g00063 383 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 78 380 - -
Sebi423g00063 383 FunFam Pectinesterase 79 381 - -
Sebi423g00063 383 Pfam Pectinesterase 88 375 IPR000070 GO:0030599|GO:0042545
Sebi423g00063 383 Gene3D - 80 382 IPR012334 -
Sebi423g00063 383 SUPERFAMILY Pectin lyase-like 78 381 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi423g00063 Sebi-Chr423 751321 753933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi423g00063 90 379 Carbohydrate Esterase AT5G47500 50.859 6.34e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi423g00063 K01051 - gmx:100802832 684.871