Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi423g00062 ATGAAAGAGAAAGGAAGGAAGGGTAGCAGAGCCAGAGAGCAGCATAGCATAGCTTTAATGCAGAAACAGAGTCAGCTACATGCAGAAGAAGGGTGCAAATGCAATGCATTATTCGGTTTCTTTTTACGAGTCAAGAACCCTGTTCTTATTCCAAGTCCTTATTCACTGCAGCCAATGGGGAGAGCTATTAGGTGGTTGAAGGGCTTGTTTGGGATAAAGAAAGACAGAGAACACAAAGAAAATTCAAATTCTGGCACCAAATGGTCTCCTCCTGTTCATTCAGAGAGAGATTCAAAAGGCTTGTGTCATAATCCAACCACCATTCCACCTAACATTTCACCAGCAGAGGCTGCTTGGTTGGCTGCTGTCAAGATTCAAACTGTATTTAGGGGATACTTGGCAAGGAAGGCACTGAGAGCCTTAAAAGGATTGGTTAAGTTACAAGCTCTTGTGAGAGGGTACTTGGTGAGGAAGCAAGCGACAGCAACCCTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCAACAGTAAGGTCTCACAAATCTCGCGGACTCATGAACACAAAAAATGAAGCATATAGGCTTCAAACACAAGCACGAAGATCCATGGAGAGGTTTGATGACAATAGAAGTGAATACACAGCTCCCATCCACAGCAGAAGGCTATCATCTTCTTTTGATGCCACGTTGAACAACACTAACAGTGTTGATGGAAGCCCAAAAATAGTGGAAGTGGACACTGGAAGGCCAAAGTCAAGGTCTAACAGGAGTAACACATCAATGTCAGATTTTGGTGATGACCCATCATTTCAACCACATCCCTCTCCCATCCCAATCCAGTGTCACATCCCTGCTCATTTATCCATACCAGATCACAGGAATTTCCATGAGTCAGATTGGGGCTTAACAGGGGAAGAGTACAGATTCTCCACAGCACAGAGCACACCACGCTTCACAAGCTCTTGTAGTTGTGGGTCTGTTGCTCCTGTCACACCTAAAACCGTTTGTACTGATAATAACTTCTTCCTTGCACAATATGGCAATTTCCCAAATTACATGGACAACACTCAGTCTTTCAAGGCTAAATTAAGGTCTCATAGTGCTCCAAAGCAACGTCCAGAACCAGGTCCAAAGAAGAGGCTTTCCCTTAATGAGATGATGGAATCTAGGAGTAGTTTGAGTGGGGTTCGAATGCAGAGGTCTTGCTCACAGATTCAAGAAGCTATTAATTTTAAGAATGCTGTGATGAGTAAGCTTGAGAAGTCCACAGAAATTGGTAGGGAGACAGAGAGGAACTTCTCCTACCAGAGGAGGTGGTGA 1320 0.4409 MKEKGRKGSRAREQHSIALMQKQSQLHAEEGCKCNALFGFFLRVKNPVLIPSPYSLQPMGRAIRWLKGLFGIKKDREHKENSNSGTKWSPPVHSERDSKGLCHNPTTIPPNISPAEAAWLAAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSHKSRGLMNTKNEAYRLQTQARRSMERFDDNRSEYTAPIHSRRLSSSFDATLNNTNSVDGSPKIVEVDTGRPKSRSNRSNTSMSDFGDDPSFQPHPSPIPIQCHIPAHLSIPDHRNFHESDWGLTGEEYRFSTAQSTPRFTSSCSCGSVAPVTPKTVCTDNNFFLAQYGNFPNYMDNTQSFKAKLRSHSAPKQRPEPGPKKRLSLNEMMESRSSLSGVRMQRSCSQIQEAINFKNAVMSKLEKSTEIGRETERNFSYQRRW 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi423g00062 439 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Sebi423g00062 439 ProSiteProfiles IQ motif profile. 121 146 IPR000048 GO:0005515
Sebi423g00062 439 MobiDBLite consensus disorder prediction 76 99 - -
Sebi423g00062 439 Gene3D - 119 169 - -
Sebi423g00062 439 SMART iq_5 140 161 IPR000048 GO:0005515
Sebi423g00062 439 SMART iq_5 117 139 IPR000048 GO:0005515
Sebi423g00062 439 PANTHER IQ-DOMAIN 5-RELATED 59 388 - -
Sebi423g00062 439 MobiDBLite consensus disorder prediction 252 266 - -
Sebi423g00062 439 MobiDBLite consensus disorder prediction 367 384 - -
Sebi423g00062 439 Pfam Protein of unknown function (DUF4005) 315 396 IPR025064 -
Sebi423g00062 439 MobiDBLite consensus disorder prediction 228 272 - -
Sebi423g00062 439 MobiDBLite consensus disorder prediction 361 384 - -
Sebi423g00062 439 Pfam IQ calmodulin-binding motif 145 159 IPR000048 GO:0005515
Sebi423g00062 439 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi423g00062 Sebi-Chr423 746376 748970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi423g00062 121 398 IQD Protein Family AT3G16490 51.408 8.23e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi423g00062 - - mtr:11413683 511.146