Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi423g00054 ATGGATAACGTTGGCGCTATGGTTTCAGAGGACATGGTTGTGATGCCGCTGTCCATAGATTTGGAAATCTTCGATCTGGACGAGGCTCTTGCGGTGGTCGGAGAATCACGCTGCCTGTTTGGAGCGTGGAAGACCTTTGTCTCGAACTTGCCGGCGGTTGTGGAGGTCGCCGAGGACGATATTTGTTCTGTTTGTATGGAAGGCTTTGATCGACACAACAAGTCAGGTGAGGGAAACAAACGAGTGCCGTGTGGACACGTGTACCATTCAAACTGCATCACCATGTGGCTCCAGCGCTGCAATTCTTGTCCTCTTTGCCGCCGCCATATCTCCCTTCACTTCTAA 345 0.5159 MDNVGAMVSEDMVVMPLSIDLEIFDLDEALAVVGESRCLFGAWKTFVSNLPAVVEVAEDDICSVCMEGFDRHNKSGEGNKRVPCGHVYHSNCITMWLQRCNSCPLCRRHISLHF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi423g00054 114 SMART ring_2 62 106 IPR001841 -
Sebi423g00054 114 SUPERFAMILY RING/U-box 54 112 - -
Sebi423g00054 114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 112 IPR013083 -
Sebi423g00054 114 Pfam Ring finger domain 61 107 IPR001841 -
Sebi423g00054 114 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 44 109 - -
Sebi423g00054 114 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi423g00054 Sebi-Chr423 636312 636656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi423g00054 61 107 C3H Transcription Factor Family AT3G60080 53.191 2.38e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi423g00054 K22378 - gmx:102669154 147.132