Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi423g00024 ATGGGCACCACCGTAACCGTCACGACTCGAGCTCAGATCCTCCGTCACACTGCCGCATTCATTTCCGCCGTACTTACTCAATCCCAGCTCCGGCGCCGCCTCATTGCCACTCTCCACCGCGATTCCCCAATCTCCAGCCAAGTCACTGTTAAACACCTGAACCTCGCCGCCGACGCTCTAGAAAGCGCCATCTCCTCTTCCAGCACCACCATTCGCTCTTCCTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCCCCGAATTCCCGGTCTCCTCCTTCCTCCTCTCCCTCATTCGCTCCCTCTGCAACCGCCCAACCGAATCCGCCATAAGCCTCCTCCGAATCTTCCATTCGAACCCTTCCCTCGCCCGATCCGAAATCGCACCGGCTCTCTACGAACACCTCTTTTCTCTCCACCTCCTCCCTGTTTTCCGGTGGTTCGATGAACAGAGAACTCAAATTTTGTCCTCCATTTCTGCGGACACCGGTGATTACTCGGTTTTGGATGAGTCAGTGGTCCTGCCTTGCACGAAATTGCTATCGAGGATGAGCGAGGATCAAGCCTCGAAGCTAAGGGAGTTGGAGAGAGAGTACGGAGAGGTTCTGGACGAGAACTGCAGGGTTTTTGCTGTGTATTTCAAAGAGGTTTTGGTGAATCAAGAGGGAGAGGCAGCAATTAGTCCACCATTGTTGATACTGAAGAGCGCCGCAGAAGGTGACAGTAGGGAGAACAGAAAGGAGGAAATGCTAATGCCTGCGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGAAATATCTATTGAATATTTGAGCAGCAGTTCCAGCAACAGATCCTCTCCGGCACCATTATATCCTCAGAGAGTCTCTCCCAGAATCCTTAAACCCCAAAAATCTTCAAAATATTGGAAAACACCGGTCTATTTAAACCCAGCCGCTGAAACTGAGTTTTCTTTAGATGAGAATTCGCTTTGTTCTTCTTCAGATTCTGAAGCAGAAAGTGAGGAAAAGGACAAAAATGTGGCATTGTTGGAGCCTCGACAAAGCCAAACCCAGGAACAAATGCAAACCATCTTCAAAGAATCCATGGGTTCGCCGGATTATCCTATGGCAGACTACGATAACCCGCCGCCTGGAAGTGGGAAACATACACCTCCCAAAGACTTTGTCTGCCCAATAACTAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACTTGTCCTATAACTCGCCAGAAGCTGCAAAACACCCAGCTACCTAAGACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACGCAACCCCAATTCAGTCCCGCCACCATGTGAGAGTCCATACGAAGATACCGAGGCAGTAGTGAACACAACAATGCCTTCAACTTCTCCTAATAGTGTAATAACACAAGCCACCTTTGATGGGGTGATTAGTGAGTTACGCCATGCAATCAATAACCTGTATATGTCAGAGATTCTCGAGGAATCTGAAATGGCAGTGCTTCAAATTGAGAAATTGTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGTATGCTATCAAAACCTCCGATAATTAATGGGTTTGTGGAGATCCTTTTGAATTCTGTTGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGCTCTAGAGACAATGCTGTTATTCAGACTCTTACACGTGTGGATACTGACGTGGAATGTATCATGGCTCTTTTCAAGCAGGGATTGACAGAGGCTGTTGTTCTGTTGTATCTCCTAAACCCTTCCACTGTGACTCTTACAGAGATGGCCATAGTGGAGTCTCTCATAAGAGTTTTTGATAGGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAAGCCCAAAACAGCTGCAGTGCTTTTACTGGCACAGATTATTGGAAGCAGTGAAGAGATGATTGCATCTTTGGTTGTCAAGACTCTTTTCTCTGAAAAAGCAATTGGAACCATTGTCAGCAGCTTGGGAGCTGAGTGGGCAGAGGAGAGAATTGCTGCAGTGGAGATCTTATTGAGATGCATGGAAGAGGATGGAACTTGCAGGAACATCATTGCTGATAAAGCAGAGCTTTCCCCTATTTTGGAAAGCTTCATCGCTGCAACTGATGGAGAGCGTTTTAAGATTGTTAAATTTTTTTCTGAGTTAATCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATCAAGGAAGAAGGACATTTTAGTACAATGCATACTCTCCTTATTCATTTGCAGACAGCCCTTCAAGATGAATGCCCAGTCATGGCCGGCCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTTCGAAACACAGATTTCCCCGCTACCCAATTAGCAGCTGCTGATACAATCATGTCACTGCAAGGGAGGTTCAACTTCACTGGAAAGCCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTACAGGTGGATAAGATCAACAACTTCTGCCCAGATCAACAAGTTCCAGAAGAAGAAAAGGCAGCTGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGTATAATTTTTGAAGCTTTAGCAGATGGCATGAAGAGCAGATATCCAGAACTACGTTCAGCATGCTTTATATCAGCTACGTGGCTCACATATATGTTGACCATTCTACCAGACACAGGGATACAAGGAGCAGCCCGTGTCTGCTTGCTAAAGCAGTTCATAACTAAATTAAATTCTGCTAGGGACGTTGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCCTACCTGATCTAACTTCCTACACTAAAGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATCCTCTCCTTTGGCATCCGAAATGCTAAAAGTTCTGGTTAATGAGAATGAATCTAAAGCAGACATTTGGATACATAAAGAGCTAATTCAAGTAGACTGCAGAGAGAATGGAGAAGTGCTGTCCGTCATTTGCTCTAAGGATAAAATATTTTCAGGCCATACAGATGGCAGTATTAAGGTTTGGACATTAAAGAATGGCTCATTCCATCTGTTGCAAGAGATCCAAGAACATTCGAAGGCTGTGACAAACTTGGTGATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGACCGAACTACAAAGGTCTGGTCTATTGGAGGGGCTGCAGTACATTGTTTACAGGTGCATGATATGAAGGACCAAATTCATAATTTAGTTGTAACCAATAGCATAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCACTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAATAAATATGTGAAATGCTTGGCTCATGCTAATGGGAGATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGTCACTGGTACAGTCAGTACTATTCAAAGTGGTTCTAAAAAATTACTTGGGAAAGCATATCCTATTTATGCACTACAAATTCACGGTGAACTTATATACGCAGCTGGCTCTTCCTTGGATGGATCTGCTGTAAAGATATGGAACAATTCCAATCACAGTATGGTTGGATCACTGCAAACTGGATCGGAAGTACGAGCTATGGCAGTGAGCTCAGAATTAATTTATTTGGGGTGCAAAGGTGGTGCTGTAGAAATTTGGGATAAGAAGAAACACGGAAGAGTTAACACGTTACAAGTGGGTACGCAGTGTAGGGTTACTTGCATGGCTCTAGACGGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGAAATGAATTAA 3984 0.4433 MGTTVTVTTRAQILRHTAAFISAVLTQSQLRRRLIATLHRDSPISSQVTVKHLNLAADALESAISSSSTTIRSSSLTLAEKLLLPLPEFPVSSFLLSLIRSLCNRPTESAISLLRIFHSNPSLARSEIAPALYEHLFSLHLLPVFRWFDEQRTQILSSISADTGDYSVLDESVVLPCTKLLSRMSEDQASKLRELEREYGEVLDENCRVFAVYFKEVLVNQEGEAAISPPLLILKSAAEGDSRENRKEEMLMPALENGRYNPMWSEREISIEYLSSSSSNRSSPAPLYPQRVSPRILKPQKSSKYWKTPVYLNPAAETEFSLDENSLCSSSDSEAESEEKDKNVALLEPRQSQTQEQMQTIFKESMGSPDYPMADYDNPPPGSGKHTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKERNPNSVPPPCESPYEDTEAVVNTTMPSTSPNSVITQATFDGVISELRHAINNLYMSEILEESEMAVLQIEKLWRGVNLGVDIHSMLSKPPIINGFVEILLNSVEPQVLQAAVFLLAEMGSRDNAVIQTLTRVDTDVECIMALFKQGLTEAVVLLYLLNPSTVTLTEMAIVESLIRVFDRKEEDLVKMCLKPKTAAVLLLAQIIGSSEEMIASLVVKTLFSEKAIGTIVSSLGAEWAEERIAAVEILLRCMEEDGTCRNIIADKAELSPILESFIAATDGERFKIVKFFSELIKLNRRTFNEQILHIIKEEGHFSTMHTLLIHLQTALQDECPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPATQLAAADTIMSLQGRFNFTGKPLTREVLLKRAGIDKSSRSLVQVDKINNFCPDQQVPEEEKAADDWERKIASVLVSHEFGIIFEALADGMKSRYPELRSACFISATWLTYMLTILPDTGIQGAARVCLLKQFITKLNSARDVEDRILSMLALNSFLHFSDGLPDLTSYTKDILKGLRELKRSSPLASEMLKVLVNENESKADIWIHKELIQVDCRENGEVLSVICSKDKIFSGHTDGSIKVWTLKNGSFHLLQEIQEHSKAVTNLVISESGDRLYSGSLDRTTKVWSIGGAAVHCLQVHDMKDQIHNLVVTNSIACFIPQGTGVKVHSLNGESKLLNSNKYVKCLAHANGRLYCGCHDSSVQEIHLVTGTVSTIQSGSKKLLGKAYPIYALQIHGELIYAAGSSLDGSAVKIWNNSNHSMVGSLQTGSEVRAMAVSSELIYLGCKGGAVEIWDKKKHGRVNTLQVGTQCRVTCMALDGNEEILVIGTSDGQIQAWEMN 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi423g00024 1327 ProSiteProfiles Trp-Asp (WD) repeats profile. 1084 1117 IPR001680 GO:0005515
Sebi423g00024 1327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 463 IPR013083 -
Sebi423g00024 1327 SUPERFAMILY RING/U-box 385 465 - -
Sebi423g00024 1327 ProSiteProfiles U-box domain profile. 387 462 IPR003613 GO:0004842|GO:0016567
Sebi423g00024 1327 SUPERFAMILY ARM repeat 545 1007 IPR016024 -
Sebi423g00024 1327 SMART WD40_4 1246 1282 IPR001680 GO:0005515
Sebi423g00024 1327 SMART WD40_4 1285 1325 IPR001680 GO:0005515
Sebi423g00024 1327 SMART WD40_4 1035 1072 IPR001680 GO:0005515
Sebi423g00024 1327 SMART WD40_4 1151 1194 IPR001680 GO:0005515
Sebi423g00024 1327 SMART WD40_4 1077 1116 IPR001680 GO:0005515
Sebi423g00024 1327 SMART WD40_4 1197 1243 IPR001680 GO:0005515
Sebi423g00024 1327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1084 1117 - -
Sebi423g00024 1327 Gene3D - 533 864 IPR011989 -
Sebi423g00024 1327 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1326 - -
Sebi423g00024 1327 ProSitePatterns Trp-Asp (WD) repeats signature. 1312 1326 IPR019775 -
Sebi423g00024 1327 Gene3D - 1020 1121 IPR015943 GO:0005515
Sebi423g00024 1327 Pfam U-box domain 389 459 IPR003613 GO:0004842|GO:0016567
Sebi423g00024 1327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1293 1327 - -
Sebi423g00024 1327 ProSiteProfiles Trp-Asp (WD) repeats profile. 1293 1327 IPR001680 GO:0005515
Sebi423g00024 1327 Pfam WD domain, G-beta repeat 1081 1116 IPR001680 GO:0005515
Sebi423g00024 1327 SUPERFAMILY WD40 repeat-like 1055 1326 IPR036322 GO:0005515
Sebi423g00024 1327 MobiDBLite consensus disorder prediction 347 364 - -
Sebi423g00024 1327 MobiDBLite consensus disorder prediction 322 390 - -
Sebi423g00024 1327 CDD RING-Ubox_PUB 389 441 IPR045210 -
Sebi423g00024 1327 Gene3D - 1122 1327 IPR015943 GO:0005515
Sebi423g00024 1327 SMART Ubox_2 391 455 IPR003613 GO:0004842|GO:0016567
Sebi423g00024 1327 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi423g00024 Sebi-Chr423 302239 309069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi423g00024 383 455 U-box Gene Family AT1G23030 53.425 1.27e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi423g00024 - - gmx:100808867 2047.71