Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi423g00021 ATGGAGATGGAACGTCCATCCAAGAGTTGGAGCATCCATACCCGATCGGAAATTATTGCTAAGTACCAAGTCATGGAGCGCATTGGCTCTGGAGCTTACGCCGACGTCTACCGTGGTCGTCGCCTCTCCGATGACCTTACCGTCGCCCTCAAGGAAATTCACGACTACCAGTCTGCCTTCCGTGAAATCGAGGCGCTGCAGATGCTTCAGGGCTCTCCAAACGTCGTCGTTATGCACGAGTACTTCTGGCGCGAAGATGAGGACGCCGTTCTCGTCCTCGAGTACCTCAGGACCGACTTGGCCACCGTCATCGCTGACGCCGCCAAGGACAAGGAAGGAGAAGGGCGTCTTCCTGTTGGGGAAATCAAACAGTGGATGATTCAGATTCTTTGTGGCCTCGACGCCTGTAACCGGAACATGATCGTGCATCGAGATTTGAAACCCTCTAATCTCTTGATTTCCGATAGTGGCATCCTCAAGCTAGCAGATTTTGGACAGGCAAGGATACTAGCAGAGCCTGAATTCTATGCTCCGGAGGAGAACCCACAACCATGTGAACATGATACTTCAAATCAGGAAAGTTCACTACATCATCCTGAAGCTTTTCCTCAGACAGATAACTTAAGCCAAGCAGGATATGGAAATCAAGAACAGGGAACTGTTTGTCATGAAGAATATTTTAGTGTTCTAGATGAGCTGAAAACAAAGAGCTCTGCAAATGACATTGATAAGGATACAAGCATTCATGATGGAAATACCTCTTGTCTTGCCACGTGCACAACAAGTGACATAGATAACGATCCTTTGAAAACTTCTATTAGTTATGAGGAAATGGAGGGGGAAGGTAAAGAACTCGGTTGTTTCACATCATGTGTTGGAACTCGTTGGTTTAGGGCTCCTGAGCTGCTTTATGGATCCACAAACTATGGTTTAGAGATTGATCTCTGGTCCTTGGGATGTATCTTTGCGGAGCTCTTTACAATGAAGCCCTTATTTCCTGGAACAGCTGATATTGATCAGCTCAGCAGAATAATTAGTGTTTTGGGAAACCTTGATGAGAAAGCTTGGCTTGGTTGTTCAAAACTTCCTGATTATGGAATAATCTCATTTAGCAAGGTAGAAAATCCCATTGGTCTTGAAGCCTGCCTGCCCAACTGCTCGCATGATGAAGTGTCTCTAATAAAACAACTGGTTTGTTATGATCCGGCAAGGAGAGCTACAGCAATGGAGCTACTCCAAGATAAATACTTTAATGAAGAACCTCTTCCTGTTCCTGTTTCTGAGCTGCGAGTTCCTTCAACCAGAAAAGGACAAGACGAGGATTCCCTTGGTGGGTGGCATGATTATAATGACTTGGGTTCTGATTCTGATTTTGATGATTTTGGCCCTATGAATATCACCAGAACTGGTACCGGTTTCTCCATACAGTTTTCTTGA 1437 0.4551 MEMERPSKSWSIHTRSEIIAKYQVMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVVVMHEYFWREDEDAVLVLEYLRTDLATVIADAAKDKEGEGRLPVGEIKQWMIQILCGLDACNRNMIVHRDLKPSNLLISDSGILKLADFGQARILAEPEFYAPEENPQPCEHDTSNQESSLHHPEAFPQTDNLSQAGYGNQEQGTVCHEEYFSVLDELKTKSSANDIDKDTSIHDGNTSCLATCTTSDIDNDPLKTSISYEEMEGEGKELGCFTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTMKPLFPGTADIDQLSRIISVLGNLDEKAWLGCSKLPDYGIISFSKVENPIGLEACLPNCSHDEVSLIKQLVCYDPARRATAMELLQDKYFNEEPLPVPVSELRVPSTRKGQDEDSLGGWHDYNDLGSDSDFDDFGPMNITRTGTGFSIQFS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi423g00021 478 MobiDBLite consensus disorder prediction 178 214 - -
Sebi423g00021 478 SUPERFAMILY Protein kinase-like (PK-like) 9 431 IPR011009 -
Sebi423g00021 478 Gene3D Transferase(Phosphotransferase) domain 1 246 432 - -
Sebi423g00021 478 PANTHER CELL DIVISION PROTEIN KINASE 21 423 - -
Sebi423g00021 478 FunFam Cyclin-dependent kinase F-1 13 107 - -
Sebi423g00021 478 MobiDBLite consensus disorder prediction 184 214 - -
Sebi423g00021 478 ProSiteProfiles Protein kinase domain profile. 22 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi423g00021 478 Gene3D Transferase(Phosphotransferase) domain 1 11 209 - -
Sebi423g00021 478 Pfam Protein kinase domain 22 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi423g00021 478 Pfam Protein kinase domain 283 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi423g00021 478 SMART serkin_6 22 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi423g00021 478 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Sebi423g00021 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi423g00021 Sebi-Chr423 274277 276312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi423g00021 4 477 Core Cell Cycle Gene Families AT4G28980 62.264 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Sebi423g00021 Pkinase 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi423g00021 - - ahf:112726382 733.021