Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi423g00004 ATGAAGAAGGAAGCTAATTACTCCTCCAATCTCACACTCCTCATTGCGGTGTTTCTAGGCACACTCTCCCTCTGTGCCTCCCACCAAAGCAATGGAGCACTCACGAACGCTGAAGCCACATACATCAGGCAACGCCAGCTTCTTTATTACAGGGACGAGTTCGGTGACAGAGGAGAGAACGTCACCGTAGACCCCTCTCTTGTTTTCGAGAATGACCGTATCAAAAATGCTTATATAGCTTTACAAGCTTGGAAGCAAGCCATTCTCTCAGATCCCAGAAACTTCACGGCTAATTGGTTTGGATCCAATGTGTGCAACTACACCGGGGTTTACTGTGCACCGACGCTCGACAATCCCAACATTCGTACCGTTGCCGGCATTGATCTCAACCATGCCGATATTGCCGGATACTTGCCAGAAGAGCTTGGTCTTCTGGAAGATCTTGCGCTTTTCCACATCAACACCAACAGATTCTGTGGCACTGTGCCGCACAAGTTTGACAAGTTGAAGCTGCTTTTCGAACTGGATCTCAGTAACAACAGGTTTCGCAGGGAAGTTCCCGGAGGAGCGGTTCCTAGGGAGTTATTCGACAAGGATCTGGACGCTATTTTCATCAATGCTAACCGTTTTGTCTTTGATCTTCCTGATAACTTTGGCAACTCACCGGTTTCCGTCATCGTTCTAGCGAACAACAGGTTCCACGGGTGCATTCCGGCGAGCTTGGGAAACATGTCCAACTTGAACGAGATTATTCTTATGAACAATGCATTCCGTTCCTGTTTACCTTCTGAGATCGGGTTGCTGAGAAACCTGACGGTTTTCGATGTGAGCTTTAATCAGTTGTTAGGTCCTTTGCCTGACACAATTGGAAACGTTGTGAGCTTGGAGCAGCTGAATGTAGCACACAACTTGCTCTCTGGGAAAATCCCTGCTAGCATTTGCATGTTGCCTAACCTTCGGAACTTTACTTATTCAGATAACTTCTTCACCGGGGAGCCACCGGCGTGCCTGAGCTTGCCGGCGTTTGATGACCGGAGGAACTGCTTGGCATCGAGGCCGTTACAGAAGTCTCAAGAACAATTCCACCGCCGCTGCCATCCCCACATCCTCCTCACTCACCTCTGCCAACCATCTCCACCGCCACCTCCTCCCTCTGTTCACTCACCACCCCCACCAGATCCACCGCCTTGCATAGAACCTCCTCCACCCCCACCATCACCACCACCTTGTGAACAGCATCCACCCCCGCCCCCACCATCACCTATTCCCCACACCTTACGTACCACTACCCTCCCCATCTCCCCCGCCGGTCACCGGTGTATGTTTCTCCACCTCCGCCAGTTCACTATACTTACCCATCACCACCACCCCTTCCCGGTTCAATATAGTTCCCCTCCACCACCACCACCCCCTGTTCATTACGGTTCACCGGCGCCACCAGTATACCATTCTCCGCCGCTAGCATCACCGCCTCCGTGTCAAACTCCATCTCCACCTGCCCCTGTATATGAAGGGCCTTTACCACCTATCTTTAGAGTCCCATATGCATCGCCTCCACCGCCACCATTCTATTGA 1575 0.5149 MKKEANYSSNLTLLIAVFLGTLSLCASHQSNGALTNAEATYIRQRQLLYYRDEFGDRGENVTVDPSLVFENDRIKNAYIALQAWKQAILSDPRNFTANWFGSNVCNYTGVYCAPTLDNPNIRTVAGIDLNHADIAGYLPEELGLLEDLALFHINTNRFCGTVPHKFDKLKLLFELDLSNNRFRREVPGGAVPRELFDKDLDAIFINANRFVFDLPDNFGNSPVSVIVLANNRFHGCIPASLGNMSNLNEIILMNNAFRSCLPSEIGLLRNLTVFDVSFNQLLGPLPDTIGNVVSLEQLNVAHNLLSGKIPASICMLPNLRNFTYSDNFFTGEPPACLSLPAFDDRRNCLASRPLQKSQEQFHRRCHPHILLTHLCQPSPPPPPPSVHSPPPPDPPPCIEPPPPPPSPPPCEQHPPPPPPSPIPHTLRTTTLPISPAGHRCMFLHLRQFTILTHHHHPFPVQYSSPPPPPPPVHYGSPAPPVYHSPPLASPPPCQTPSPPAPVYEGPLPPIFRVPYASPPPPPFY 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi423g00004 524 MobiDBLite consensus disorder prediction 376 425 - -
Sebi423g00004 524 FunFam Leucine-rich repeat extensin-like protein 5 220 360 - -
Sebi423g00004 524 Gene3D Ribonuclease Inhibitor 74 223 IPR032675 -
Sebi423g00004 524 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 522 - -
Sebi423g00004 524 Pfam Leucine rich repeat N-terminal domain 79 112 IPR013210 -
Sebi423g00004 524 MobiDBLite consensus disorder prediction 376 431 - -
Sebi423g00004 524 MobiDBLite consensus disorder prediction 461 501 - -
Sebi423g00004 524 PRINTS Proline rich extensin signature 380 392 - -
Sebi423g00004 524 PRINTS Proline rich extensin signature 396 417 - -
Sebi423g00004 524 PRINTS Proline rich extensin signature 450 475 - -
Sebi423g00004 524 PRINTS Proline rich extensin signature 417 433 - -
Sebi423g00004 524 Gene3D Ribonuclease Inhibitor 224 361 IPR032675 -
Sebi423g00004 524 SUPERFAMILY L domain-like 79 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi423g00004 Sebi-Chr423 46641 48688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi423g00004 22 360 Leucine-rich Repeat extension Gene Families AT3G24480 70.112 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi423g00004 - - qsa:O6P43_004046 585.874