Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi422g00073 ATGTTACACTGTCTCAACACTTCTTCGGACATGACAGTGTTGGAAAGGCAAAGGGCAAGGAAGAAGTGGCAACAACAAGAACAGGAGGAACACGATCGCCAAAGCTACTTTTGTGGAAGCACTGGGTTTTCATCTTCTTCTTCGCTGCAAGTTCATGGGGGTTTGGTGGGTAGTGATTCTGGGCTTGGTGAGGTTGTAGTTGCAGCTCAATCGATGAAACCTGACCCGGGTTTGGAAAATGGGTGGCCCGAATTAGGCAAATTTGAAACGGGTTTCGGGTCTTCTTCTGGATTGGTTGTTCCTCCTGCTTCTGGGTTTGACGTGAATTCTTCAATTTCAAGGACTGGTGGAAGAGATTCAGCCATAGAGAAGGTGATGAATTCCGCATGTGGGAAGAAGAGGAAAGCTGCTGATAAGGCTCAGAATTCCAAGGTTGTTACAGAGAGTGATAGCAAAGAGAAGAGGATCAAACCTGAATACATTCATGTCCGTGCACGTCGTGGTCAAGCCACTGACAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCAAGACTTGACTTCAACATTGATGAATTGTTTGCCAAAGAGGTGTTTCCTCAAAGTTTTCCAACCATAGGAATGCCATCAGAAATGACTAACCCTGCTTATCTTCAGTTCAATTCAGCACAACAACTTGTTTCTTGTTGTGGTGGATTGATAAATAATATGGGGATAATCCCTCCAGATATGGCACTTCGAAGGAACATTAGTGCCCCTCTATCTTTGCCTGAAACGTTTCTTGACTCATCTTGTTTCAATCAAATTCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTACAATATGGCTTTTGATCAAGGAAGAACAGCATCCTTTCCTTCTCAACCATTTACAGGTCTAGTTGAAGCTAGCAATTTGAAGATGGAGATGTAA 1095 0.4237 MLHCLNTSSDMTVLERQRARKKWQQQEQEEHDRQSYFCGSTGFSSSSSLQVHGGLVGSDSGLGEVVVAAQSMKPDPGLENGWPELGKFETGFGSSSGLVVPPASGFDVNSSISRTGGRDSAIEKVMNSACGKKRKAADKAQNSKVVTESDSKEKRIKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFPQSFPTIGMPSEMTNPAYLQFNSAQQLVSCCGGLINNMGIIPPDMALRRNISAPLSLPETFLDSSCFNQILPSSTWEGDFQNLYNMAFDQGRTASFPSQPFTGLVEASNLKMEM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi422g00073 364 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 50 272 IPR024097 GO:0006355
Sebi422g00073 364 FunFam Basic helix-loop-helix transcription factor 166 238 - -
Sebi422g00073 364 Gene3D - 166 240 IPR036638 GO:0046983
Sebi422g00073 364 SMART finulus 175 225 IPR011598 GO:0046983
Sebi422g00073 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 238 IPR036638 GO:0046983
Sebi422g00073 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983
Sebi422g00073 364 CDD bHLH_AtBPE_like 159 244 - -
Sebi422g00073 364 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi422g00073 Sebi-Chr422 701249 704160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi422g00073 10 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.338 2.39e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi422g00073 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi422g00073 - - gmx:100794256 425.246