Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi422g00025 ATGATGGAAAAGAGAAACTTTTCTGAATTCATATCAGAGCTAATAGCTCTGGGCGATGAGGTTGTTTCGTTTGCTAAGAATCATGAAATTGTCATAGACGCTTTCTCTCAGTTTGCCATGTTGGTTGAGAAATTTGCACCAATCTTCAATGATTTGAGGAACAAAAGCACAATCATGGACAAGCCAGCTATTAGAAAGTCGTTGGAATCTCTTGAGAATGAGCTTCACCGTGCTAAAGCTTTGATCAAAAGTCACCATTTGGGAGAGCCTATCCAACAAATTGAGGACATAACGCATGATCTTGGTCGATCATTAGGCCTGTTCCTTGTGGCTAGTCTTGAACTTGAAGTGTCCATAAGTTTTAGAGAAAAGATTAGTACATTGCAAAAACAGTTGATGAATGCAAGATTTGGTGGGAATACCAGCCTAACTTCAAGTCCAATATCAAAGTTTGTCATTGCCAGTGCTGTGAAGGTGGAAGGGGAAATAGAAGAGGAAATAATTAATGTTACTATTGATGATATTGTACTGCAACTTAAGAATGGTGATGCTGAAGAATTTGCAATTGCACTTTTAAGACTAAAGAAGTTCATCAGGGAAGGACAACTGGATAGCAGTGTAATTAATGAGGAAGCTGTTCTTTTTATTCTTTTTAATCGTCTAAGTTCATGTAAGGCATATAGGCTGAGCATCATTCAATTGCTAAGAAGCATTGCTTTGGGAAATGATGAGACAAAGGAGAAGATGACAGATATTGAGTTTTTATCAGCAGTGGTGAAGTCTCTGGCAAGGGATGCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGTTAGAGCTCTCTCACATTCCTGCAGTTAGACGGAATATTGGAAGAATTAAGGGGTGTATTGTTATGTTAGTTTCGATCCTGAATGGAATTGACCCTGTTGCTTCAAATGATGCAGCAAAGTTGTTGGATATATTATCCAGCAATACTCAAAATGCACTCAATATGGCTGAGGCTGGGTCTGACATGAACAAGATCCTTATGGCAACAGCACTTTCTAGGTTGATGCTTACTGATCATAGCAAACTTTCCCTTGGACGAGATGGGGCAATTGAGTCCCTTGTCAAAATGTTTAATTCTGGGAAACTTGAGTCCAAGTTATCTGCTCTAAATGCACTGCAAAATCTTTCCAGTTTGACAGAAAATGTGCAGCGTCTCATCAGAACTGGAATTGCAGGATCTCTACTGCAACTTCTTTTTTCTGTAACATCTGTGCTCATGACTCTGCGGGAGCCTGCATCAGCTATTCTTGCAAGCATTGCTCAGTCAGAATCCTTTCTTGTTAATCAAGATGTGTCTCAACAAATGCTTTCACTTTTGAATCTTACCTGCCCAGTAATTCAAGGTAATCTTTTAGAAGCTCTAAATAGCATTGCTTCCCATCCTGGTGCTTCTAAAGTGAGAAGAAAAATGAAGGAAAAATGTGCACTTGAGCTAATTTTACCCCTTCTGAAGGGAACCAAAACTGAAATACGGAGCAAGGCCTTGAATTTGCTGTATACTCTCTCCAAAGATCTAACAGATGAACTGAGTGAACATCTTGATGAAGCTCATCTTTTCAACATTGTTAATATTGTCTCATCAACAACATCAGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTCATGATAATAAAGTGACAGATGCACTAAAGAGAGCAAATTTGTTGCCCATTTTGGTGTCCATTATGGATTCAAGCACAGGAAGTAACTCGCGCACAAGATGTAGCATAGTGGAGAGCATTGCAGGTATTATAATCCGATTCACACATTCCTCTGACAAGAAACTACAACGTCTTTCAGCAGAACATGGGGTGATTCCTTTGCTTGTAAAACTCCTCTCAAGTGGTTCAACAATCACAAAATTCAGAGCTTCAAGCTCTCTGGCTCAACTATCACAGAATTCTGTGTCTCTTAAGAGGTCTAGGAAGTCAAGGTGGTTGTGTGTTTCTCCCTCAATGGATGCATACTGTGAAGTTCATGATGGCTATTGCTTTGTGAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTTATCCAAATATTGGAAGATAAGGATGAGGAAGCAGTGGAAGCTGCCCTTAGTTCCCTTTCAACTCTCTTGCAAGATGAAATCTGGGAAGGTGGTGTTAATTGCATAGCTAAATTGTCAGGTGTAGAGGCTATTGTAAAAATTTTAGAAGTAGGTGATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAATAAAATATGGAGAATCCGCTCAGGTGGTTCTTATTGATTTGGCACAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCAGTGTTGGAGCTCCTGCAAGCTCAATCTAGTTATTTCTGA 2457 0.3989 MMEKRNFSEFISELIALGDEVVSFAKNHEIVIDAFSQFAMLVEKFAPIFNDLRNKSTIMDKPAIRKSLESLENELHRAKALIKSHHLGEPIQQIEDITHDLGRSLGLFLVASLELEVSISFREKISTLQKQLMNARFGGNTSLTSSPISKFVIASAVKVEGEIEEEIINVTIDDIVLQLKNGDAEEFAIALLRLKKFIREGQLDSSVINEEAVLFILFNRLSSCKAYRLSIIQLLRSIALGNDETKEKMTDIEFLSAVVKSLARDAEERREAVGLLLELSHIPAVRRNIGRIKGCIVMLVSILNGIDPVASNDAAKLLDILSSNTQNALNMAEAGSDMNKILMATALSRLMLTDHSKLSLGRDGAIESLVKMFNSGKLESKLSALNALQNLSSLTENVQRLIRTGIAGSLLQLLFSVTSVLMTLREPASAILASIAQSESFLVNQDVSQQMLSLLNLTCPVIQGNLLEALNSIASHPGASKVRRKMKEKCALELILPLLKGTKTEIRSKALNLLYTLSKDLTDELSEHLDEAHLFNIVNIVSSTTSDSEKAAAVGILSNLPVHDNKVTDALKRANLLPILVSIMDSSTGSNSRTRCSIVESIAGIIIRFTHSSDKKLQRLSAEHGVIPLLVKLLSSGSTITKFRASSSLAQLSQNSVSLKRSRKSRWLCVSPSMDAYCEVHDGYCFVNSTFCLVKAGAVSPLIQILEDKDEEAVEAALSSLSTLLQDEIWEGGVNCIAKLSGVEAIVKILEVGDVKVQEKALWMLERIFRVEEHRIKYGESAQVVLIDLAQKSDSRLKSTVAKVLAVLELLQAQSSYF 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi422g00025 818 SMART arm_5 730 770 IPR000225 GO:0005515
Sebi422g00025 818 SMART arm_5 479 519 IPR000225 GO:0005515
Sebi422g00025 818 SMART arm_5 614 654 IPR000225 GO:0005515
Sebi422g00025 818 SMART arm_5 686 726 IPR000225 GO:0005515
Sebi422g00025 818 SMART arm_5 564 611 IPR000225 GO:0005515
Sebi422g00025 818 SMART arm_5 353 393 IPR000225 GO:0005515
Sebi422g00025 818 SMART arm_5 242 281 IPR000225 GO:0005515
Sebi422g00025 818 Gene3D - 340 666 IPR011989 -
Sebi422g00025 818 Gene3D - 684 816 IPR011989 -
Sebi422g00025 818 Gene3D - 220 339 IPR011989 -
Sebi422g00025 818 Pfam Armadillo/beta-catenin-like repeat 692 724 IPR000225 GO:0005515
Sebi422g00025 818 Coils Coil 61 81 - -
Sebi422g00025 818 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 169 818 - -
Sebi422g00025 818 SUPERFAMILY ARM repeat 171 334 IPR016024 -
Sebi422g00025 818 SUPERFAMILY ARM repeat 327 773 IPR016024 -
Sebi422g00025 818 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi422g00025 Sebi-Chr422 191688 195321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi422g00025 182 818 U-box Gene Family AT1G76390 28.098 3.14e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi422g00025 K08332 - gmx:102659538 1174.07