Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi422g00022 ATGAAGTTCTGTAAAAAATACCAAGAGTACATGCAAGGTCAGGAGAAGAAGCTTCCAGGGGTTGGCTTCAAGAAGCTCAAGAAAATCTTGAAGAAATGCAGGAATGACCGTGAATACCACAAAGGCCTCAATAATGCATCCCTTGGCAACAGAACCTGTCCTGACCATTGCCCAGTGTGCGATGGGACATTCTTCCCTTCCCTTCTCAATGAAATGTCAGTTATAGTTGGCTGCTTTAATCAGCATGCGAAGAAATTGCTTGAGCTACATCTCTCTTCTGGCTTCAGAAAGTGCCTTTTATGGTTCAAAGGCAAATTACAAGGGAACCATACTGATCTGATTCAAGAAGGCAAAGATCTGGTCCAGAGTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGCGAACTTATAGCATTCCACATCAATTTAAGGGAAACTAATGACAAGTCAAGAAATGCATCTTCTTTGTTCGATGAATGTTCTCTTACATTTAAGGATGGAAAACCATCTCTTACCTGTGACATCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTATTTGTTTGGACACAGTATTTGATCCAGTTTCTCTGACTTGCGGCCATATTTTCTGCTATATTTGTGCCTGCTCAGCTGCATCAGTATCTATTGTTGATGGTCTTAAGGCAGCAGATCCTAAACAGAAATGTCCTCTATGTCGAGAGGGTGCAGTTTATAAAGGTGCTGTGCACTTGGATGAACTAAATATTTTATTAGGCCGAAGCTGTGGTGAATATTGGGAGCAAAGGCTTCAGACAGAGAGGGTAGAGAGGATCAAGCAAATAAAGGAACACTGGGAATCACAGTGTAGGGCATTAACTGGCGTCTAA 879 0.413 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRNDREYHKGLNNASLGNRTCPDHCPVCDGTFFPSLLNEMSVIVGCFNQHAKKLLELHLSSGFRKCLLWFKGKLQGNHTDLIQEGKDLVQSMHKEILQSPWLCELIAFHINLRETNDKSRNASSLFDECSLTFKDGKPSLTCDIFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAADPKQKCPLCREGAVYKGAVHLDELNILLGRSCGEYWEQRLQTERVERIKQIKEHWESQCRALTGV 292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi422g00022 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 121 291 IPR033326 -
Sebi422g00022 292 SMART ring_2 188 236 IPR001841 -
Sebi422g00022 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 290 IPR013083 -
Sebi422g00022 292 Pfam Zinc finger, C3HC4 type (RING finger) 185 238 - -
Sebi422g00022 292 SUPERFAMILY RING/U-box 181 240 - -
Sebi422g00022 292 ProSiteProfiles Zinc finger RING-type profile. 188 237 IPR001841 -
Sebi422g00022 292 CDD RING-HC_BAH1-like 178 251 - -
Sebi422g00022 292 ProSitePatterns Zinc finger RING-type signature. 203 212 IPR017907 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi422g00022 Sebi-Chr422 181920 183906 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi422g00022 185 237 C3H Transcription Factor Family AT4G28270 41.379 1.97e-06 45.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi422g00022 K16275 - gmx:100787904 500.745