Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi422g00019 ATGGGAAACAAGAAAGAGATGAGAAGCTATGCGTGTTATATGCTAGTATTGTGTCTTACCTTCATTTGGTGGTTCCGCGTAACAGTGTGCTCTTCATTCAGTGATTTGGAAGCGCTGCTAAAGCTGAAGGATTCCATCAAGGGAAAGGAAGCCAAACACGATGCACTGCAAGACTGGAAGTTTTCGTCGTCACTTTCGGCACACTGTTCATTTTCTGGGGTAACATGTGACCAAAACCTCCGTGTGATTGCTCTCAACGTGACAGGCGTTCCTCTCTTCGGGACCCTTCCGCGGGAGATCGGAATGCTTGACAAGCTGGAGAATCTCACCATCTCCATGGACAATCTCACCGGCACTCTCCCTATGGAGCTTTCCAACCTCACTTCGCTTAAGATCCTCAACGTCTCTCACAACGGCTTCTCCGGCAACTTTCCCGGTAACATCACCTTCCGCATGACCAAACTGGAGGTCCTCGACGCTTACGACAACAACTTCAACGGATCACTTCCTGAGGAAATCGTCCAACTCACGGAACTCAAGTACCTCCACCTCGGCGGGAACTATTTTTCCGGCACGATACCGGAGAGTTACTCCGAGTTTCAGAGCTTGGAGTATTTGTGCTTGAACGCAAACAGCTTAACTGGCAAGATTCCCAAGAGCTTAGCCAAGTTGAAGATGTTGAAGGAACTGTTTCTCGGCTACACCAATGCTTTCGATGGAATTCCACCGGAGCTTGGTTCCATTGAATCTCTGAGACTGCTTGACTTGTCTAGCTCCGGCCTCAGCGGAGAGATTCCACCGAGCTTGGGCAATTTGACAAACCTCCACACGTTGTTCTTGCAAATGAACAACCTCTCTGGAACACTTCCGCCGCAGCTATCTTCCATGATGAGTCTCATGTCGCTGGACCTCTCCTACAACAACCTCACCGGATTGATTCCGGAGAGCTTCTCCCAGCTTAAAAACCTCACTCTCATGAACTTCTTCAAGAACAACTTCCGCGGCCCCATCCCCTCCTTCGTCGGAGACCTTCCCAATCTGGAAACGCTTCAGCTTTGGGAGAACAACTTCTCCTTCGTGCTGCCTCAGAATTTGGGAGGGAGGTTGCAAACGTTCATTCTCACCGATAACTTCTTCGACGGTCCAATCCCAAACGGAATCGGCGAGTGCAAGTCACTCACCAAGATCCGAGTCGCCAATAACTACCTAGACGGGCCGGTTCCCCCTGGGATTTTCAAACTACCTTTAGTTACAATAATGGAACTGAATAACAACCACTTTAACGGCCAACTGCCTTCCGTGATTTCCGGCGATTCTCTCGGTACGCTCACTCTTTCAAACAACTTATTCACTGGGAGAATTCCCCCTGAGATGAAAAACCTCAGAGCGTTACAGGCTTTGTTGCTGGACGCCAATGAGTTCGTTGGCGAAATCCCAGGGGAAGTGTTTGAAATACCAAGGCTGACGAAGGTCAACATAAGCGGCAACAATCTCACAGGTCCAATCCCAACGACGATTACTCACTGCGTTTCGCTGACTGCCGTTGACCTGAGCCGGAACATGCTGGACGGCGAGGTTCCGAAGGGGATGAAGCTCCTGAAGGACTTAAGCATTTTGAATCTGTCCCGTAACCATATATCTGGGCCAGTTCCCGACGAGATTCGATTCATGACGAGCCTCACCACTCTGGATCTCTCCAACAACAATTTCACCGGCAGTATCCCCACCGGGGGTCAGTTTTTAGTCTTCAACGACAAGTCGTTTTATGGGAACCCCAACCTCTGTTTCCCCCACCAGACCTCTTGCCCTTCCTTGATCTACCTATCAACGAAAAGCCATAGCAAAACGGCGAGGGTGAAAGCCGTCGTGATCGGGATTGCACTCGCCACCGCGGTGCTGCTGGTGCTGGTGACGTTGCACGTGACGAGGAAGAGAAAGCTGCACAGATCAAAGGCGTGGAAGCTGACAACGTTTCAGAGGCTAGACTTCAAAGCGGAGGACGTGGTGGAGTGCCTGAAGGAAGAGAACATAATAGGGAAAGGAGGAGCAGGGATCGTGTACAGAGGGTCCATGCCAAACGAAACGGACATAGCAATAAAGCGTTTAGTTGGGCAAGGAAGTGGGAGAAACGATTACGGGTTCAAAGCGGAGATAGAGACGCTGGGGAAGATAAGGCACAGGAATATAATGAGGCTTCTGGGGTATGAGCCTCTCAGTCTATGTCCTCCATCGCTGGCTCCTACGGCTACATTGCTCCAGTATGCTTACACGCTGAAAGTGGACGAGAAAAGTGACGTGTATAGCTTTGGCGTAGTGCTGTTGGAGCTGATCGTAGGAAGAAAGCCAGTGGGTGAATTTGGAGATGGCGTGGACATTGTTGGATGGGTGAATCAAACGAGATTAGAACTCTCTCAGCCGTCGGATGCGGCATTGGTGTTAGCAGTGGTGGACCCACGCCTCACAGAGTATCCTTTGACAAGTGTCATCCATATGTTCAATATAGCTATGATGTGTGTTAAAGAAATGGGGCCCTCAAGGCCTACCATGAGGGAAGTTGTTCATATGCTCACCAATCCTCCTCCACAGTCTACCACTCATCACAACCTAATTAATCTCTAG 2619 0.4998 MGNKKEMRSYACYMLVLCLTFIWWFRVTVCSSFSDLEALLKLKDSIKGKEAKHDALQDWKFSSSLSAHCSFSGVTCDQNLRVIALNVTGVPLFGTLPREIGMLDKLENLTISMDNLTGTLPMELSNLTSLKILNVSHNGFSGNFPGNITFRMTKLEVLDAYDNNFNGSLPEEIVQLTELKYLHLGGNYFSGTIPESYSEFQSLEYLCLNANSLTGKIPKSLAKLKMLKELFLGYTNAFDGIPPELGSIESLRLLDLSSSGLSGEIPPSLGNLTNLHTLFLQMNNLSGTLPPQLSSMMSLMSLDLSYNNLTGLIPESFSQLKNLTLMNFFKNNFRGPIPSFVGDLPNLETLQLWENNFSFVLPQNLGGRLQTFILTDNFFDGPIPNGIGECKSLTKIRVANNYLDGPVPPGIFKLPLVTIMELNNNHFNGQLPSVISGDSLGTLTLSNNLFTGRIPPEMKNLRALQALLLDANEFVGEIPGEVFEIPRLTKVNISGNNLTGPIPTTITHCVSLTAVDLSRNMLDGEVPKGMKLLKDLSILNLSRNHISGPVPDEIRFMTSLTTLDLSNNNFTGSIPTGGQFLVFNDKSFYGNPNLCFPHQTSCPSLIYLSTKSHSKTARVKAVVIGIALATAVLLVLVTLHVTRKRKLHRSKAWKLTTFQRLDFKAEDVVECLKEENIIGKGGAGIVYRGSMPNETDIAIKRLVGQGSGRNDYGFKAEIETLGKIRHRNIMRLLGYEPLSLCPPSLAPTATLLQYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGEFGDGVDIVGWVNQTRLELSQPSDAALVLAVVDPRLTEYPLTSVIHMFNIAMMCVKEMGPSRPTMREVVHMLTNPPPQSTTHHNLINL 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi422g00019 872 SUPERFAMILY Protein kinase-like (PK-like) 669 857 IPR011009 -
Sebi422g00019 872 FunFam Leucine-rich repeat receptor-like protein kinase 33 195 - -
Sebi422g00019 872 ProSiteProfiles Protein kinase domain profile. 672 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi422g00019 872 Gene3D Ribonuclease Inhibitor 317 605 IPR032675 -
Sebi422g00019 872 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 227 310 - -
Sebi422g00019 872 Gene3D Phosphorylase Kinase; domain 1 637 736 - -
Sebi422g00019 872 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 239 851 - -
Sebi422g00019 872 Pfam Leucine rich repeat 178 235 IPR001611 GO:0005515
Sebi422g00019 872 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Sebi422g00019 872 SMART LRR_typ_2 557 580 IPR003591 -
Sebi422g00019 872 SMART LRR_typ_2 296 319 IPR003591 -
Sebi422g00019 872 SMART LRR_typ_2 272 295 IPR003591 -
Sebi422g00019 872 SMART LRR_typ_2 344 367 IPR003591 -
Sebi422g00019 872 SMART LRR_typ_2 152 176 IPR003591 -
Sebi422g00019 872 SMART LRR_typ_2 461 485 IPR003591 -
Sebi422g00019 872 Gene3D Ribonuclease Inhibitor 239 316 IPR032675 -
Sebi422g00019 872 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 639 739 - -
Sebi422g00019 872 Gene3D Transferase(Phosphotransferase) domain 1 737 868 - -
Sebi422g00019 872 SUPERFAMILY L domain-like 67 315 - -
Sebi422g00019 872 PRINTS Leucine-rich repeat signature 299 312 - -
Sebi422g00019 872 PRINTS Leucine-rich repeat signature 557 570 - -
Sebi422g00019 872 Pfam Leucine Rich repeat 558 572 IPR001611 GO:0005515
Sebi422g00019 872 Gene3D Ribonuclease Inhibitor 152 238 IPR032675 -
Sebi422g00019 872 Gene3D Ribonuclease Inhibitor 34 151 IPR032675 -
Sebi422g00019 872 SUPERFAMILY RNI-like 254 576 - -
Sebi422g00019 872 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Sebi422g00019 872 ProSiteProfiles Leucine-rich repeat profile. 298 319 IPR001611 GO:0005515
Sebi422g00019 872 Pfam Protein tyrosine and serine/threonine kinase 759 856 IPR001245 GO:0004672|GO:0006468
Sebi422g00019 872 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi422g00019 Sebi-Chr422 152102 155237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi422g00019 711 860 Receptor kinase-like Gene Family AT1G75820 62.500 2.94e-50 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi422g00019 PK_Tyr_Ser-Thr 2.8e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi422g00019 - - lja:Lj3g3v3375770.1 1112.06