Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi420g00026 ATGACTCTTTTTTATTCCGTGGCTGAATTGAATCAAGCAAGTCACTTTATACATGTTGGGACGATTGAAAGTTCTTATCAGTTCTCCAAACAAAATCCAATTGGAAAAATGTCCACTGATAAGGCTGGAAGCTCGAGACGAAATAGGAAGGTTGATCGTTTTGTAGCTAAGTTGACCCCTAATGAGGATATGGTGTTTATAGAGAATAAATTTTGGCTGAAGTTTCAAGGTGAAATTAGGGGTCGAAATGTTATCCTAATGGACCCTTCTGGGTTTACTTTTAATGTGTCTGTAGAGTTCCATGGGTATAATGGGGTTGGAATTATGACTGGAGTTGAAAACATTGTTAGTCACTATAACTTGGTTGAGAGTTACTGGGTGTTATTCACATATAAAGGGAATTATGAGTTTGACATTAGAGTAGTGAATGGAAATGTGGAGGTCAATTATCCTAGGGTTGAGACTGATGAAGATGTTGATGTCCAACCTGAGGAGTATGAGGAGGACCCTGAGGAGCCCCTATTTATGTGGGAAGTTACTTTGACAAAGGCTGCTGCATCCGGTGCTAACGCTTTGCTCATACCTGCTAGGATTGTGAGGGACATATTGGACAATAATCAGGAAGTTGTGACTGTTATAGATGAGGGTGGTGAATTAATTCCATGCAAGGTTCTGAAGCCTAAAAGACGACCAAGTGAGCGGTACCTATCCAGTGGGTGGTATGAGTTTATTCGGGGAAAGAAATTAAAGGCTGGGGATAAGATAAGATTTTACTCAGATGATAGTATGGAATCTTTGTCTGCGGTTGTAGAACGCATTTGA 822 0.4027 MTLFYSVAELNQASHFIHVGTIESSYQFSKQNPIGKMSTDKAGSSRRNRKVDRFVAKLTPNEDMVFIENKFWLKFQGEIRGRNVILMDPSGFTFNVSVEFHGYNGVGIMTGVENIVSHYNLVESYWVLFTYKGNYEFDIRVVNGNVEVNYPRVETDEDVDVQPEEYEEDPEEPLFMWEVTLTKAAASGANALLIPARIVRDILDNNQEVVTVIDEGGELIPCKVLKPKRRPSERYLSSGWYEFIRGKKLKAGDKIRFYSDDSMESLSAVVERI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi420g00026 273 Gene3D - 45 146 IPR015300 -
Sebi420g00026 273 SUPERFAMILY DNA-binding pseudobarrel domain 173 265 IPR015300 -
Sebi420g00026 273 SUPERFAMILY DNA-binding pseudobarrel domain 51 143 IPR015300 -
Sebi420g00026 273 CDD B3_DNA 180 262 IPR003340 GO:0003677
Sebi420g00026 273 SMART B3_2 54 145 IPR003340 GO:0003677
Sebi420g00026 273 SMART B3_2 177 272 IPR003340 GO:0003677
Sebi420g00026 273 Pfam B3 DNA binding domain 178 265 IPR003340 GO:0003677
Sebi420g00026 273 ProSiteProfiles B3 DNA-binding domain profile. 177 273 IPR003340 GO:0003677
Sebi420g00026 273 Gene3D - 152 272 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi420g00026 Sebi-Chr420 629504 631136 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi420g00026 B3 2.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi420g00026 - K14486 vvo:131614770 59.3066