Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi420g00010 ATGGCTTATCTACACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAGCCAAGCAATATACTACTTGATGATGATTTTACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTGTCAAAGGTGATGAGAACATGCCCTCTTGTGACTCAACAACATCTTTCAACTCAACACACGGTCTATTATGTGGCTCTGTTGGCTACATAGCCCCTGAGTATGGAATGGGAAAACATGCTTCAACTAAGGGTGATGTTTATAGTTTTGGAGTACTTGTTCTAGAAATAGTGACAAGTAGACGCCCAACAAATGTCCTTATCCATGAAGGCTCTAGCTTGCATGAATGGGTTAAGAGACAATATTCACACAAGCTTGATAACATTGTTGAACAAGCATTTGCAAAGAAACTCAGCAGCAGAGATCCGTCGTCGATTGCCCCGTCCTCCGTCGCGTCGTCTTCACCGATGACTAGAACGAGGAGATCGTCTTCACCGGACACCGTCCTCCATCATTCGCGAGCTCGCCGGCAGGAGTTGGAGAAGACGGTGACTGTATCGGGTAAGGAGAAGAAGGAAGTTGGGTTGGGAAGCAGTCAACACCGCGTTTCATCCACCGATGTCGCCGTTCTTGGCGAGAAAGCAATCTTATACCTGAAACGACATCCTCAAAACCTTCCCTCACTCACTCCCCACTTCACACCCGAAGCAGCCTCCTACGTTCTCCTCAACTCCCAATTCAACCAACCCCTCACCCTCAAGTTCCTCAATTGGGCCCAACCCCACCCTTTCCTCACACCCCAATGCAAATGCCTTGCCCTCCACCTCCTCACTCGCTTCAACCTCTACAAAACCGCCCAAACCCTCGCCGAAGACCTCGCCTCCTACCTAAACGACACCACCGGCACTGTCGTCTTCCACCTCCTCAAGGACTCCTACCATTCCTGCAACTCCACCTCCGCAGTCTTCGATCTTGTCGTCAAGTCTTACTCTCGCCTCAACCACCTCGACAAGGCCATCAACATCGTCAACCTCGCCATCCACCACGGCTTCTCCCCAACCGTACTTTCCTACAACGCAATTCTTGATTCAATTTTCAGGTTTAGGTCTCGTCGTTCATCAATTCACGACGCCGAACGCGTCTTCGGCGACATGATGCGAAACGGCGTGTCGCCGAATGTGTACACTTACAACGTCATGATCCGCGGCGTTGTTGCGGCTGGGGATTTGAAATCTGGCTTCCTCCTCATGCGTGAAATGGAGAGGAAAGGGTGTTTGCCCAATGTGGTTACTTATAACACGTTAATTGCTGCGAGTTGCAAAGAGAAGAGGGTGGAGGAGGCGATTACATTGTTGAGAGCTATGGCGAAGAAAGGCGTGGAGCCGAATTTGATTTCGTATAATGCTGTTATCAATGGATTGTGTGGTCAAAGGAGGATGAAAGAGACTCAAGAGGTGCTTGAGGAGATGAATGTGAAAGGCTTGGCTCCTGATCAGGTCACTTATAATACGCTTGTGAATGGGTTTTGTAAAGAAGGGAATTTCCACCAAGGGCTTGTTCTTCTTCATGAGATGGCTGGTAAGGGGTTATCTCCTAATGTTGTTACTTACACCACTTTGATCAATGGTATGTGTAAGGTTAAGAATCTTAGTCGTGCCATGGAGCTTTTTGATCAGATGCTTGTTAGGGGACTGTGTCCCAATGAGAGAACTTATACAACTATAATTGATGGGTTCTGCCAGCAAGGGTTAATGGATGAGGCTTATAAGGTTTTGAATGAAATGATTGTTAGTGGATTTTCGCCCTCGGTTATCACTTACAATGCTCTTATTCATGGATATTGCTTTTTGGGGAGGGTTGAGGAAGCTGTGGGAATTTTGAGGGGTATGGTTGAGAGGGGTTTGTCCCCTGATGTTGTCAGTTATAGCACTGTTATAGCTGGGTTTTGCCGAAATGGGGAGGTGGGAAAAGCCTTTGAAATGAAGGTGGAGATGGTTGAGAAGGGCATCTTGCCAGATGCTGTTATGTATTCGTCACTTATACAAGGCATCTGTCAGCAGAGAAAACTGTCGGAAGCTTTTGATCTCTTGCGAGAGATGCTGGACAGGGGTCTATCACCTGATGAGGTTACTTATACTAGTTTGATGAATGCTTATTGTGTTGAAGGCGAATTGAGTAAGGCTTTTCATTTGCATGATGAAATGATAGAGAAGGGGTTTTTGCCAGATTTAGTTACTTATAGTGTGCTTATTAATGGACTTAATAAGAAAGCTAGGACAAAAGAAGCTAAGAAGCTTCTTCTGAAGTTGTTTTTTGACGAGTCTGTACCGAATGATGTCACATATGATACTCTGATAGAAAACTGTAGTAATAATGAATTTAAGAGTGTAATAGGTCTTGTCAAAGGATTCTGCATGAAGGGTTTAATGAATGAAGCAGATCGAGTTTTTAAGACAATGCTTCAGAGGAATTATAAGCCTGATGGAGCAGTTTATAATTTAATAATTCATGGACATTGTAGATGTGGTAATGTTCATAAGGCATATAACATGTATATCGAGATGGTGAATCAAGGTTTTGTTCCTCATATGGTGACTGTAATTGCTCTCATTAAAACTCTATCTAGGGAAGGGATGAATGATGAGCTGAGTTGGATAATCCAAAACATATTGAGCAGCTGTAGGCTCAATGATGCTGAGCTACCTAAAGCACTTATTGAAATTAACTTTAAAGAAGGCAACATGGATGCTGTTTTAAATGTGTTAACTGAAATGGCCAAGGATGGCCTATTACCTGATGGTGGAAAGTATTCATATGCTCCAGCAAGTGCCTAA 2832 0.4439 MAYLHHYSPVRVVHCDLKPSNILLDDDFTALVTDFGIARLVKGDENMPSCDSTTSFNSTHGLLCGSVGYIAPEYGMGKHASTKGDVYSFGVLVLEIVTSRRPTNVLIHEGSSLHEWVKRQYSHKLDNIVEQAFAKKLSSRDPSSIAPSSVASSSPMTRTRRSSSPDTVLHHSRARRQELEKTVTVSGKEKKEVGLGSSQHRVSSTDVAVLGEKAILYLKRHPQNLPSLTPHFTPEAASYVLLNSQFNQPLTLKFLNWAQPHPFLTPQCKCLALHLLTRFNLYKTAQTLAEDLASYLNDTTGTVVFHLLKDSYHSCNSTSAVFDLVVKSYSRLNHLDKAINIVNLAIHHGFSPTVLSYNAILDSIFRFRSRRSSIHDAERVFGDMMRNGVSPNVYTYNVMIRGVVAAGDLKSGFLLMREMERKGCLPNVVTYNTLIAASCKEKRVEEAITLLRAMAKKGVEPNLISYNAVINGLCGQRRMKETQEVLEEMNVKGLAPDQVTYNTLVNGFCKEGNFHQGLVLLHEMAGKGLSPNVVTYTTLINGMCKVKNLSRAMELFDQMLVRGLCPNERTYTTIIDGFCQQGLMDEAYKVLNEMIVSGFSPSVITYNALIHGYCFLGRVEEAVGILRGMVERGLSPDVVSYSTVIAGFCRNGEVGKAFEMKVEMVEKGILPDAVMYSSLIQGICQQRKLSEAFDLLREMLDRGLSPDEVTYTSLMNAYCVEGELSKAFHLHDEMIEKGFLPDLVTYSVLINGLNKKARTKEAKKLLLKLFFDESVPNDVTYDTLIENCSNNEFKSVIGLVKGFCMKGLMNEADRVFKTMLQRNYKPDGAVYNLIIHGHCRCGNVHKAYNMYIEMVNQGFVPHMVTVIALIKTLSREGMNDELSWIIQNILSSCRLNDAELPKALIEINFKEGNMDAVLNVLTEMAKDGLLPDGGKYSYAPASA 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi420g00010 943 Pfam PPR repeat 492 524 IPR002885 -
Sebi420g00010 943 Pfam PPR repeat 737 766 IPR002885 -
Sebi420g00010 943 MobiDBLite consensus disorder prediction 164 196 - -
Sebi420g00010 943 Gene3D Tetratricopeptide repeat domain 796 902 IPR011990 GO:0005515
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 637 671 IPR002885 -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 391 IPR002885 -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Sebi420g00010 943 MobiDBLite consensus disorder prediction 140 163 - -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 742 776 IPR002885 -
Sebi420g00010 943 SUPERFAMILY TPR-like 324 737 IPR011990 GO:0005515
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 827 861 IPR002885 -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Sebi420g00010 943 SUPERFAMILY Protein kinase-like (PK-like) 1 125 IPR011009 -
Sebi420g00010 943 Gene3D Tetratricopeptide repeat domain 687 795 IPR011990 GO:0005515
Sebi420g00010 943 FunFam Pentatricopeptide repeat-containing protein At5g39710 480 586 - -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 672 706 IPR002885 -
Sebi420g00010 943 Pfam Protein kinase domain 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Sebi420g00010 943 Gene3D Transferase(Phosphotransferase) domain 1 1 192 - -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Sebi420g00010 943 Gene3D Tetratricopeptide repeat domain 597 686 IPR011990 GO:0005515
Sebi420g00010 943 Gene3D Tetratricopeptide repeat domain 304 449 IPR011990 GO:0005515
Sebi420g00010 943 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi420g00010 943 Pfam PPR repeat 799 823 IPR002885 -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Sebi420g00010 943 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 799 936 - -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Sebi420g00010 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
Sebi420g00010 943 Gene3D Tetratricopeptide repeat domain 452 524 IPR011990 GO:0005515
Sebi420g00010 943 Gene3D Tetratricopeptide repeat domain 525 596 IPR011990 GO:0005515
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 499 533 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 534 568 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 799 827 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 604 638 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 464 497 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 830 861 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 369 393 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 674 708 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 429 462 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 570 603 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 394 428 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 709 742 IPR002885 -
Sebi420g00010 943 NCBIfam pentatricopeptide repeat 639 673 IPR002885 -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 792 826 IPR002885 -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Sebi420g00010 943 MobiDBLite consensus disorder prediction 140 198 - -
Sebi420g00010 943 Pfam PPR repeat family 601 650 IPR002885 -
Sebi420g00010 943 Pfam PPR repeat family 426 474 IPR002885 -
Sebi420g00010 943 Pfam PPR repeat family 352 403 IPR002885 -
Sebi420g00010 943 Pfam PPR repeat family 671 719 IPR002885 -
Sebi420g00010 943 Pfam PPR repeat family 531 580 IPR002885 -
Sebi420g00010 943 Pfam PPR repeat family 830 874 IPR002885 -
Sebi420g00010 943 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi420g00010 Sebi-Chr420 240208 244472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi420g00010 381 936 Glycosyltransferase AT1G05670 26.212 2.67e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi420g00010 Pkinase 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi420g00010 - - gmx:100808787 1067.76